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| [[Embryology History]] | | [[Embryology History]] |
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| == Shortcuts ==
| | [[Site Map]] |
| * [[Wiki setup]] - page to place background information about how the current site has been set up and operates.
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| * [[Special:NewFiles]] - recent images and files (PDF, Word, mov, mp3) added as thumbnails, see also [[Special:ListFiles|List New Files]]
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| * [[Templates]] - site templates.
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| * [[Special:Categories]] - current site category list. [[File:Embryology Categories.doc]]
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| * [[:Category:Quiz]] | [[ANAT2341 Quiz 09]] - simple quizzes used in some classes.
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| * [[MediaWiki:Sidebar]] - edit the sidebar.
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| * [[Special:AllPages]] - as it says, all the pages in this project.
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| * [[Site map 2004]] map links to the original internet pages.
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| * [[Cardiac_Embryology]] - ILP Project.
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| * [[Font colours]] - table of different font colours available for wiki pages.
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| '''Google''' - [http://www.google.com/sidewiki/feeds/entries/author/111323767938085717695/default?hl=en Sidewiki Feed] | [http://www.google.com/profiles/111323767938085717695 Profile]
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| ==Current Site Links==
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| * embryology [http://php.med.unsw.edu.au/embryology/index.php?title=Main_Page http://php.med.unsw.edu.au/embryology/index.php?title=Main_Page]
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| * cellbiology [http://php.med.unsw.edu.au/cellbiology/index.php?title=Main_Page http://php.med.unsw.edu.au/cellbiology/index.php?title=Main_Page]
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| * somswiki [http://php.med.unsw.edu.au/somswiki/index.php?title=Main_Page http://php.med.unsw.edu.au/somswiki/index.php?title=Main_Page]
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| ==SOMS Wiki==
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| * [http://php.med.unsw.edu.au/somswiki/index.php?title=Main_Page Main Page]
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| * [http://php.med.unsw.edu.au/somswiki/index.php?title=PC2_OGTR_Lab#BioHood_Booking_Calendar BioHood_ Booking Calendar]
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| * [http://php.med.unsw.edu.au/somswiki/index.php?title=Tutorial_SoMS_Communication Tutorial_SoMS_Communication]
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| * [http://php.med.unsw.edu.au/somswiki/index.php?title=Special:AllPages All Pages]
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| * [http://php.med.unsw.edu.au/somswiki/index.php?title=Special:NewFiles New Images and Files]
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| ==Cell Biology Wiki==
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Main_Page Main Page]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Special:AllPages All Pages]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Special:NewFiles New Images and Files]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=ANAT3231_References ANAT3231 References]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Course_Timetable ANAT3231 Course Timetable]
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| ==Student Online Work==
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=ANAT3231_Projects_2009 ANAT3231 Cell Biology Projects 2009]
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| * [http://php.med.unsw.edu.au/embryology/index.php?title=ANAT2341_2009_Students ANAT2341 Embryology Projects 2009]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Independent_Learning_Projects Independent Learning Projects] | [http://php.med.unsw.edu.au/cellbiology/index.php?title=ILP_z3212774 ILP Cardiac Embryology Background] | [[Cardiac_Embryology|Cardiac Embryology Project]] | [http://php.med.unsw.edu.au/cellbiology/index.php?title=ILP_z3221319 Neural Project] | [http://php.med.unsw.edu.au/cellbiology/index.php?title=Delirium_Catalogue Delirium Catalogue]
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| ==Collaborative Online Work==
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| * [[Talk:2009_Lab_10|Embryology 10 Stem Cells Lab - Antonio Lee]]
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| * [[Talk:2009_Lab_7|Embryology 7 Muscle Lab - Steve Palmer]]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=2009_Lab_6 Cell Biology Lab - Cytoskeletal Exercise - Thomas Fath]
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| * [http://php.med.unsw.edu.au/somswiki/index.php?title=Anatomy_2009_AE_Practical_Classes Anatomy 2009 AE Practical Classes - Ken Ashwell]
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| * [[Cardiac_Embryology|Cardiac Embryology - 2009 ILP Project]]
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| ==Tables==
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| * http://en.wikipedia.org/wiki/Collapsible_tables
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| * http://en.wikipedia.org/wiki/Collapsible_tables
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| * http://en.wikipedia.org/wiki/Wikipedia:NavFrame
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| ==Wave==
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| * [http://wave.google.com/help/wave/about.html Google Wave] - a new open communication/collaboration tool designed by Google. Currently (September 2009) in testing phase. [http://en.wikipedia.org/wiki/Google_Wave Wave]
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| * [http://mediawikiwave.blogspot.com/ Mediawiki Wave blogspot] | [http://en.wikipedia.org/wiki/Google_Wave wikipedia Wave]
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| ==myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks==
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| * [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702357/?tool=pmcentrez myGRN: a database and visualisation system for the storage and analysis of developmental genetic regulatory networks]
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| ==Learning How to Use==
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| ===Text===
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| * [[Editing Basics|Embryology Editing Basics]]
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| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Editing_Basics Cell Biology Editing Basics]
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| * [http://php.med.unsw.edu.au/cellbiology/images/3/30/Wiki-refcard.pdf Wiki 1 page Refcard PDF]
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| * [http://www.openoffice.org/ Open Office] is a free office suite that includes a word processor that can export documents in Wiki format. [[Using Open Office]]
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| * [http://meta.wikimedia.org/wiki/Help:Contents#For_editors Help for editors]
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| ===Images===
| |
| * [http://php.med.unsw.edu.au/cellbiology/index.php?title=Cell_Biology_Image_Tutorial Cell Biology Image Tutorial] | [http://en.wikipedia.org/wiki/Image_tutorial Wiki Image Tutorial]
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| ===Tables===
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| * Online [http://devblog.cloudsync.com/examples/wikiTableGenerator Generate Mediawiki table code].
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| ===References===
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| * See also the information about [[ANAT2341_References|reference sources]] and reuse.
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| == Mediawiki ==
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| [http://www.mediawiki.org/wiki/Extension_Matrix Extension Matrix] The Extension Matrix provides an overview of the extensions available to be added on this site.
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| ===Extensions implemented===
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| * [http://www.mediawiki.org/wiki/Extension:LDAP_Authentication LDAP Authentication] Mac/PC tested OK
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| * [http://www.mediawiki.org/wiki/Extension:Quiz Quiz] Mac/PC tested OK
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| * [http://www.mediawiki.org/wiki/Extension:CategoryTree CategoryTree] Mac/PC tested OK
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| * [http://www.mediawiki.org/wiki/Extension:Quicktime Quicktime] Mac/PC tested OK; Browser problem - Safari, Firefox tested OK, IE width height does not format correctly.
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| ==Extensions - under test==
| |
| * [http://www.mediawiki.org/wiki/Extension:EasyTimeline EasyTimeline] http://en.wikipedia.org/wiki/Template:Early_evolution_of_the_light_bulb
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| * [http://www.mediawiki.org/wiki/Extension:WikiArticleFeeds Extension:WikiArticleFeeds]
| |
| ** The WikiArticleFeeds Extension is a MediaWiki extension for converting regular wiki articles into RSS and Atom feeds. Note: This is pretty much the polar opposite of XFeed
| |
| * [http://www.mediawiki.org/wiki/Extension:XFeed_-_RSS_Feed_Aggregator Extension:XFeed - RSS Feed Aggregator]
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| ** Allow adding of RSS feeds to Wiki page. could use for journals which feed new articles.
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| * [http://www.mediawiki.org/wiki/Extension:Cite Cite]
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| * [http://www.mediawiki.org/wiki/Extension:ProcessCite ProcessCite] Installed earlier, but problem with PubMed access, need to have some proxy to work. Contacted extension writer who did not resolve issue. Would like to get this working for referencing to work off PMID. --[[User:S8600021|Mark Hill]] 10:17, 2 September 2009 (EST)
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| * [http://www.mediawiki.org/wiki/Extension:Calendar_(Barrylb) Calendar] - installed here, but not currently used. Active on SOMS Wiki for biohood booking.
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| * [http://www.mediawiki.org/wiki/Extension:Hierarchical_Namespace_Permissions Extension:Hierarchical Namespace Permissions]
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| * RSS, RSSNews need to set up additional extension
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| * Flash Video play (FLV) using flowplayer. Installed but not configured correctly. --[[User:S8600021|Mark Hill]] 08:17, 2 October 2009 (EST)
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| * PDFwriter - to generate hardcopy compilations of course lecture notes.
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| * http://usability.wikimedia.org/wiki/Multimedia:Upload_wizard
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| ==Flash==
| |
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| Originally used the Flowplayer extension. Did not seem to be able to place more than one movie on a page with this extension.
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| Now testing the MediaWiki FLV Player. http://paulgu.com/wiki/FLV_Player
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| The following are default parameters, they can be overwritten through syntax <wikiflv></wikiflv>.
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| whatever.flv|whatever.png
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| width="320"
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| height="180"
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| position="none"
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| autostart="true"
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| logo="true"
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| autostart="false"
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| volume="100"
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| repeat="false"
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| | |
| ==Quicktime==
| |
| http://www.mediawiki.org/wiki/Extension:Quicktime
| |
| | |
| Unfortunately will not work on all platforms. I have used Flash instead until a movie format compatible with all platforms is found.
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| Size/Width attributes don't hold up in Internet Explorer (6 or 7); Video doesn't play-on-click in Google Chrome
| |
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| <qt>file=Male_gonad_2.mov|width=276px|height=500px|controller=true|autoplay=false</qt>
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| | |
| ===Attribute Reference===
| |
| * width=px or % (Modify the width of the object)
| |
| * height=px or a% (Modify the height of the object)
| |
| * autoplay=true/false (Start playing the file or wait at first frame, default:true)
| |
| * controller=true/false (Show the controller, default:true)
| |
| * name (object-specific)
| |
| * id (embed-specific)
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| * src (embed-specific)
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| Background Reading
| |
| * http://digitalmedia.oreilly.com/2006/09/29/two-slick-quicktime-tricks.html?page=2
| |
| * http://www.oreillynet.com/pub/a/oreilly/digitalmedia/2007/07/16/quicktime-web-movie-secrets.html
| |
| * http://www.appleinsider.com/articles/09/07/06/ogg_theora_h_264_and_the_html_5_browser_squabble.html
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| ==Referencing==
| |
| There are several referencing solutions and I like the PMID link version as it requires no student formatting (but does not yet seem to work on my site). I would also like a local copy of some key references, in particular for recent findings sections of notes, with its own page based on PMID and then we have the whole PMC ID issue.
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| Annotation of the reference?
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| [http://www.ncbi.nlm.nih.gov/pubmed/ Pubmed] | [http://www.ncbi.nlm.nih.gov/sites/entrez?db=PMC&itool=toolbar PMC]
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| Extensions: [http://www.mediawiki.org/wiki/Extension:Cite Cite] | [http://www.mediawiki.org/wiki/Extension:ProcessCite ProcessCite]
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| WikiPathways Web Services
| |
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| http://www.wikipathways.org/index.php/Help:WikiPathways_Webservice
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| http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0006447
| |
