Difference between revisions of "X Chromosome"

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** The process starts at the "X inactivation centre" and spreads along the chromosome.
** The process starts at the "X inactivation centre" and spreads along the chromosome.
==Chromosome Statistics==
May 2012 (EST)
May 2012 (EST)
| width="300px"|Type
| width="300px"|
| width="300px"|Number
| width="300px"|
| Length (bps)
| '''Length (bps)'''
| 155,270,560
| '''155,270,560'''
| Known Protein-coding Genes
| Known Protein-coding Genes

Revision as of 13:37, 24 May 2012


Human X chromosome

Humans have 23 pairs of chromosomes, 22 autosomes and a pair of sex chromosomes. Females have a pair of X chromosomes (46, XX) and males have one X and one Y Chromosome (46, XY). This section of notes introduces the X chromosome and its role in development. There is a separate page discussing X Inactivation that occurs in female development to provide the correct gene dosage.

  • Genes such as Wnt-4 and DAX-1 necessary for initiation of female pathway ovary development
  • An early discovery (1961) was that in order to have correct levels of X chromosome gene/protein expression (gene dosage), females must "inactivate" a single copy of the X chromosome in each and every cell. The initiator of the X inactivation process was discovered (1991) to be regulated by a region on the inactivating X chromosome encoding an X inactive specific transcript (XIST), that acts as RNA and does not encode a protein.
  • The genetic content of the X chromosome has been strongly conserved between species because these genes have become adapted to working as a single dose - Ohno's law
  • X inactivation occurs randomly throughout the embryo, generating a mosaic of maternal and paternally derived X chromosome activity in all tissues and organs. This can be seen in the fur colour of tortoiseshell cats.

Links: X Inactivation | Y Chromosome

X Chromosome Overview

  • 1400+ genes
  • 150 million base pairs
  • Contains about 5% of the haploid genome.
  • Genes encode house-keeping and specialized functions.
  • Conserved in gene content between species.
  • In females, one of the X-chromosomes is inactivated in each and every cell (known since 1961).
    • This inactivation occurs during embryogenesis.
    • X Inactivation appears to be random in somatic cells. (mosaic pattern)
    • The process starts at the "X inactivation centre" and spreads along the chromosome.

Chromosome Statistics

May 2012 (EST)

Length (bps) 155,270,560
Known Protein-coding Genes 812
Novel Protein-coding Genes 24
Pseudogene Genes 780
miRNA Genes 128
rRNA Genes 22
snRNA Genes 85
snoRNA Genes 64
Misc RNA Genes 52
SNPs 2,172,609


  • The DNA sequence of the human X chromosome. Ross MT, Grafham DV, Coffey AJ, Scherer S, McLay K, Muzny D, Platzer M, Howell GR, Burrows C, Bird CP, Frankish A, Lovell FL, Howe KL, Ashurst JL, Fulton RS, Sudbrak R, Wen G, Jones MC, Hurles ME, Andrews TD, Scott CE, Searle S, Ramser J, Whittaker A, Deadman R, Carter NP, Hunt SE, Chen R, Cree A, Gunaratne P, Havlak P, Hodgson A, Metzker ML, Richards S, Scott G, Steffen D, Sodergren E, Wheeler DA, Worley KC, Ainscough R, Ambrose KD, Ansari-Lari MA, Aradhya S, Ashwell RI, Babbage AK, Bagguley CL, Ballabio A, Banerjee R, Barker GE, Barlow KF, Barrett IP, Bates KN, Beare DM, Beasley H, Beasley O, Beck A, Bethel G, Blechschmidt K, Brady N, Bray-Allen S, Bridgeman AM, Brown AJ, Brown MJ, Bonnin D, Bruford EA, Buhay C, Burch P, Burford D, Burgess J, Burrill W, Burton J, Bye JM, Carder C, Carrel L, Chako J, Chapman JC, Chavez D, Chen E, Chen G, Chen Y, Chen Z, Chinault C, Ciccodicola A, Clark SY, Clarke G, Clee CM, Clegg S, Clerc-Blankenburg K, Clifford K, Cobley V, Cole CG, Conquer JS, Corby N, Connor RE, David R, Davies J, Davis C, Davis J, Delgado O, Deshazo D, Dhami P, Ding Y, Dinh H, Dodsworth S, Draper H, Dugan-Rocha S, Dunham A, Dunn M, Durbin KJ, Dutta I, Eades T, Ellwood M, Emery-Cohen A, Errington H, Evans KL, Faulkner L, Francis F, Frankland J, Fraser AE, Galgoczy P, Gilbert J, Gill R, Glöckner G, Gregory SG, Gribble S, Griffiths C, Grocock R, Gu Y, Gwilliam R, Hamilton C, Hart EA, Hawes A, Heath PD, Heitmann K, Hennig S, Hernandez J, Hinzmann B, Ho S, Hoffs M, Howden PJ, Huckle EJ, Hume J, Hunt PJ, Hunt AR, Isherwood J, Jacob L, Johnson D, Jones S, de Jong PJ, Joseph SS, Keenan S, Kelly S, Kershaw JK, Khan Z, Kioschis P, Klages S, Knights AJ, Kosiura A, Kovar-Smith C, Laird GK, Langford C, Lawlor S, Leversha M, Lewis L, Liu W, Lloyd C, Lloyd DM, Loulseged H, Loveland JE, Lovell JD, Lozado R, Lu J, Lyne R, Ma J, Maheshwari M, Matthews LH, McDowall J, McLaren S, McMurray A, Meidl P, Meitinger T, Milne S, Miner G, Mistry SL, Morgan M, Morris S, Müller I, Mullikin JC, Nguyen N, Nordsiek G, Nyakatura G, O'Dell CN, Okwuonu G, Palmer S, Pandian R, Parker D, Parrish J, Pasternak S, Patel D, Pearce AV, Pearson DM, Pelan SE, Perez L, Porter KM, Ramsey Y, Reichwald K, Rhodes S, Ridler KA, Schlessinger D, Schueler MG, Sehra HK, Shaw-Smith C, Shen H, Sheridan EM, Shownkeen R, Skuce CD, Smith ML, Sotheran EC, Steingruber HE, Steward CA, Storey R, Swann RM, Swarbreck D, Tabor PE, Taudien S, Taylor T, Teague B, Thomas K, Thorpe A, Timms K, Tracey A, Trevanion S, Tromans AC, d'Urso M, Verduzco D, Villasana D, Waldron L, Wall M, Wang Q, Warren J, Warry GL, Wei X, West A, Whitehead SL, Whiteley MN, Wilkinson JE, Willey DL, Williams G, Williams L, Williamson A, Williamson H, Wilming L, Woodmansey RL, Wray PW, Yen J, Zhang J, Zhou J, Zoghbi H, Zorilla S, Buck D, Reinhardt R, Poustka A, Rosenthal A, Lehrach H, Meindl A, Minx PJ, Hillier LW, Willard HF, Wilson RK, Waterston RH, Rice CM, Vaudin M, Coulson A, Nelson DL, Weinstock G, Sulston JE, Durbin R, Hubbard T, Gibbs RA, Beck S, Rogers J, Bentley DR. Nature. 2005 Mar 17;434(7031):325-37. PMID: 15772651
  • Extensive gene traffic on the mammalian X chromosome. Emerson JJ, Kaessmann H, Betrán E, Long M. Science. 2004 Jan 23;303(5657):537-40. PMID: 14739461

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Cite this page: Hill, M.A. (2021, February 27) Embryology X Chromosome. Retrieved from https://embryology.med.unsw.edu.au/embryology/index.php/X_Chromosome

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© Dr Mark Hill 2021, UNSW Embryology ISBN: 978 0 7334 2609 4 - UNSW CRICOS Provider Code No. 00098G