User:Z3414482: Difference between revisions

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| [mailto:m.hill@unsw.edu.au Mark Hill] 18 August 2016 - These seem good quiz questions. Note that question 2 your answer says option 2 but it is actually 3 that you have shown as the correct answer.
| [mailto:m.hill@unsw.edu.au Mark Hill] 12 October 2016 - These seem good quiz questions. Note that question 2 your answer says option 2 but it is actually 3 that you have shown as the correct answer.
| Assessment 5/5
| Assessment 5/5
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==Lab 5 Assessment==
==Lab 5 Assessment==
Questionnaire done
Questionnaire done

Revision as of 12:04, 13 October 2016

Student Information (expand to read)  
Individual Assessments
Mark Hill.jpg

Please leave this template on top of your student page as I will add your assessment items here.

Beginning your online work - Working Online in this course

  1. Make your own page.
    1. Log-in to the embryology website using your student ID and Zpass.
    2. Click your student number (shown in red at the top right of the screen following log-in)
    3. Create page using the tab at the top of the page, and save.
  2. Add the following to the top of your page exactly as shown - {{ANAT2341Student2016}}
  3. How would you identify your Type in a group and add to your page.
  4. What was the most interesting thing you learnt in the fertilisation lecture?


If you have done the above correctly your ZID should be blue and not red on this page link - ANAT2341 2016 Students.


Here is the example page I made in Lab 1 Student Page. With a few more explanatory notes.

Click here to email Dr Mark Hill

Editing Links: Editing Basics | Images | Tables | Referencing | Journal Searches | Copyright | Font Colours | Virtual Slide Permalink | My Preferences | One Page Wiki Card | Printing | Movies | Language Translation | Student Movies | Using OpenOffice | Internet Browsers | Moodle | Navigation/Contribution | Term Link | Short URLs | 2018 Test Student
Lab 1 Assessment - Researching a Topic
In the lab I showed you how to find the PubMed reference database and search it using a topic word. Lab 1 assessment will be for you to use this to find a research reference on "fertilization" and write a brief summary of the main finding of the paper.
  1. Add a new Sub-heading "Lab 1 Assessment" (without the quotes).
  2. Search the database for a reference on "fertilisation" published in the last 5 years.
    1. It must be a research article not a Review.
    2. The full paper must be available online, not just the abstract.
  3. Add a link to this reference using its PMID using this code <pubmed>XXXXX</pubmed> replacing the Xs with just the PMID number (no text).
  4. Under the reference write a short summary of the papers main findings.
    1. Only 1-2 paragraphs.
    2. Must not be a copy of the paper abstract.
  5. Save and you are done.

PubMed logo.gif

Lab 2 Assessment - Uploading an Image
  1. Upload a research image using the guide information below. The image uploaded for your individual assessment can relate to your project or from fertilisation to week 3 of development (upload only a single image).
  2. Add that image to your own individual page (see Images) including an image title and its reference link.
  3. No two students should upload the same image, check new images before you upload.
  4. No student can delete an image once uploaded, please contact me by email with the image address and I will delete (with no penalty, just glad to help out).


2016 Group Project Topic - Signaling in Development

OK you are now in a group

  1. Go to the blank group page and add a topic that interests you along with your student signature.
  2. No two groups can do the same topic, but at this stage the final topic has not yet been decided (next week).

Initially the topic can be as specific or as broad as you want.


Chicken embryo E-cad and P-cad gastrulation.png

Chicken embryo E-cad and P-cad gastrulation[1]

References

  1. <pubmed>27097030</pubmed>
Lab 4 Assessment - GIT Quiz

ANAT2341 Quiz Example | Category:Quiz | ANAT2341 Student 2015 Quiz Questions |

Design 4 quiz questions based upon gastrointestinal tract. Add the quiz to your own page under Lab 4 assessment and provide a sub-sub-heading on the topic of the quiz.

An example is shown below (open this page in view code or edit mode). Note that it is not just how you ask the question, but also how you explain the correct answer.

Lab 5 Assessment - Course Review
Complete the course review questionnaire and add the fact you have completed to your student page.
Lab 6 Assessment - Cleft Lip and Palate
  1. Identify a known genetic mutation that is associated with cleft lip or palate.
  2. Identify a recent research article on this gene.
  3. How does this mutation affect developmental signalling in normal development.
Lab 7 Assessment - Muscular Dystrophy
  1. What is/are the dystrophin mutation(s)?
  2. What is the function of dystrophin?
  3. What other tissues/organs are affected by this disorder?
  4. What therapies exist for DMD?
  5. What animal models are available for muscular dystrophy?
Lab 8 Assessment - Quiz
A brief quiz was held in the practical class on urogenital development.
Lab 9 Assessment - Peer Assessment
  • This will form part of your individual assessment for the course.
  • Each student should now look at each of the other Group projects in the class.
  • Next prepare a critical assessment (should include both positive and negative issues) of each project using the project group assessment criteria.
  • This assessment should be pasted without signature on the top of the specific project's discussion page. (minimum length 3-5 paragraphs/project)
  • This critical assessment should also be pasted on your own student page.
  • Each student should therefore have 5 separate reports pasted on their own page for this assessment item.
  • Length, quality and accuracy of your reports will be part of the overall mark for this assessment.
    • there will be a greater loading on this than simple question assessments.
Lab 10 Assessment - Stem Cells
As part of the assessment for this course, you will give a 15 minutes journal club presentation in Lab 10. For this you will in your current student group discuss a recent (published after 2011) original research article (not a review!) on stem cell biology or technology.
Lab 10 - Stem Cell Presentations 2016
Group Mark Assessor General Comments

Group 1: 15/20

Group 2: 19/20

Group 3: 20/20

Group 4: 19/20

Group 5: 16/20

Group 6: 16/20

The students put great effort in their presentation and we heard a nice variety of studies in stem cell biology and regenerative medicine today. The interaction after the presentation was great.

As general feedback I would like to advise students to:

  • Never discuss M&M as a separate section in journal clubs. I gave this advice prior to the lab, but still most groups did talk through the M&M section.
  • Do not use your slides as cheat sheets, avoid text on slides, know what messages you need to get across, use images to illustrate these
  • Engage with your slides. Talk through them. Point at panels. Gauge your audience’s understanding by making eye contact with them
  • Avoid using abbreviations. Most people do not readily understand these and will lose track
Lab 11 Assessment - Heart Development
Read the following recent review article on heart repair and from the reference list identify a cited research article and write a brief summary of the paper's main findings. Then describe how the original research result was used in the review article.

<pubmed>26932668</pubmed>Development

ANAT2341Lectures - Textbook chapters  
Lecture (Timetable) Textbook - The Developing Human Textbook - Larsen's Human Embryology
Embryology Introduction Introduction to the Developing Human
Fertilization First Week of Human Development Gametogenesis, Fertilization, and First Week
Week 1 and 2 Second Week of Human Development Second Week: Becoming Bilaminar and Fully Implanting
Week 3 Third Week of Human Development Third Week: Becoming Trilaminar and Establishing Body Axes
Mesoderm Fourth to Eighth Weeks of Human Development Fourth Week: Forming the Embryo
Ectoderm Nervous System Development of the Central Nervous System
Early Vascular Cardiovascular System Development of the Vasculature
Placenta Placenta and Fetal Membranes Development of the Vasculature
Endoderm - GIT Alimentary System Development of the Gastrointestinal Tract
Respiratory Respiratory System Development of the Respiratory System and Body Cavities
Head Pharyngeal Apparatus, Face, and Neck Development of the Pharyngeal Apparatus and Face
Neural Crest Nervous System Development of the Peripheral Nervous System
Musculoskeletal Muscular System Development of the Musculoskeletal System
Limb Development of Limbs Development of the Limbs
Renal Urogenital System Development of the Urinary System
Genital Urogenital System Development of the Urinary System
Stem Cells
Integumentary Integumentary System Development of the Skin and Its Derivatives
Endocrine Covered through various chapters (see also alternate text), read head and neck, neural crest and renal chapters.
Endocrinology Textbook - Chapter Titles  
Nussey S. and Whitehead S. Endocrinology: An Integrated Approach (2001) Oxford: BIOS Scientific Publishers; ISBN-10: 1-85996-252-1.

Full Table of Contents

Heart Cardiovascular System Development of the Heart
Sensory Development of Eyes and Ears Development of the Eyes
Fetal Fetal Period Fetal Development and the Fetus as Patient
Birth and Revision
Additional Textbook Content - The following concepts also form part of the theory material covered throughout the course.
  1. Principles and Mechanisms of Morphogenesis and Dysmorphogenesis
  2. Common Signaling Pathways Used During Development
  3. Human Birth Defect
ANAT2341 Course Timetable  
Week (Mon) Lecture 1 (Mon 1-2pm) Lecture 2 (Tue 3-4pm) Practical (Fri 1-3pm)
Week 2 (1 Aug) Introduction Fertilization Lab 1
Week 3 (8 Aug) Week 1 and 2 Week 3 Lab 2
Week 4 (15 Aug) Mesoderm Ectoderm Lab 3
Week 5 (22 Aug) Early Vascular Placenta Lab 4
Week 6 (29 Aug) Gastrointestinal Respiratory Lab 5
Week 7 (5 Sep) Head Neural Crest Lab 6
Week 8 (12 Sep) Musculoskeletal Limb Development Lab 7
Week 9 (19 Sep) Renal Genital Lab 8
Mid-semester break
Week 10 (3 Oct) Public Holiday Stem Cells Lab 9
Week 11 (10 Oct) Integumentary Endocrine Lab 10
Week 12 (17 Oct) Heart Sensory Lab 11
Week 13 (24 Oct) Fetal Birth and Revision Lab 12

ANAT2341 2016: Moodle page | ECHO360 | Textbooks | Students 2016 | Projects 2016

Student Page

Lab Attendance

Z3414482 (talk) 14:34, 5 August 2016 (AEST)

Z3414482 (talk) 14:47, 12 August 2016 (AEST)

Z3414482 (talk) 13:15, 19 August 2016 (AEST)

Z3414482 (talk) 13:52, 26 August 2016 (AEST)

Z3414482 (talk) 13:43, 2 September 2016 (AEST)

Z3414482 (talk) 13:24, 9 September 2016 (AEST)

Mark Hill (talk) 12:03, 13 October 2016 (AEDT) Where are your later lab attendance records?

Lab 1 Assessment

<pubmed>PMC4496430</pubmed> Summary This research article studies the effectiveness of artificial oocyte activation (AOA) with a calcium ionophore for fertilization under two circumstances. The first overall circumstance, under which the effectiveness of this procedure was tested for, was when there had been total fertilization failure in past IVF cycles. Secondly, the other more specific cases AOA was tested under, were those that showed severe male factor infertility with non-motile spermatozoa even after pentoxifylline (PF) treatement. AOA is a useful method in avoiding total fertilization failure in human in vitro fetilizaiton-embryo transfer (IVF-ET). AOA attained through calcium ionophore can induce calcium oscillation in oocytes and initate the fertilization process.

For the purpose of this study, between January 2006 to June 2013, 29 intracytoplasmic sperm injection (ICSI) – AOA were performed. All cases were characterised by male factor infertility, however out of the 29 cases further division was made depending on sperm motility after PF treatment. From the data collected, it was concluded that regardless of whether sperm motility was restored after PF treatment or not, oocyte activation is a useful method to ensure fertilization in TESE-ICSI cycles.


Mark Hill 18 August 2016 - OK so this looks at mechanisms of how the oocyte can be artificially activated giving us insights into the normal in vivo mechanism. Good summary. Assessment 5/5

Lab 2 Assessment

V polarity.jpg


Position of echinoderms in phylogeny of bilateria and establishment of D/V polarity during early development of the sea urchin embryo.

Mark Hill 29 August 2016 - You do not need to include the Reference, Copyright and Student Image template on your page. But you did need to have a link to the reference with the image legend, as shown below.


Position of echinoderms in phylogeny of bilateria and establishment of D/V polarity during early development of the sea urchin embryo.[1]

Assessment 4/5

Reference

<pubmed>19956794</pubmed>

Copyright

Copyright Lapraz et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.


Note - This image was originally uploaded as part of an undergraduate science student project and may contain inaccuracies in either description or acknowledgements. Students have been advised in writing concerning the reuse of content and may accidentally have misunderstood the original terms of use. If image reuse on this non-commercial educational site infringes your existing copyright, please contact the site editor for immediate removal.

Lab 4 Assessment

1 1. Which of the following options lists the order of events that happen at different stages in liver development of an embryo?

Cell differentiation, hepatic diverticulum development, enmeshing stromal capillaries
Hepatic diverticulum development, septum transversum forming liver stroma, epithelial cord profileration
Hepatic diverticulum, development, epithelial cord proliferation, formation of hepatic trabeculae
Cell differentiation, epithelial cord proliferation, formation of liver stroma

2 2. Where does the mesoderm lie in relation to the notochord?

Ventrally
Dorsally & Ventrally
Laterally, Rostrally & Ventrally
Caudally

3 3. The process of ‘canalization’ that occurs at the endoderm of GIT wall from beginning of week 5 includes:

Endoderm in the GIT wall proliferates, blockage of GIT endoderm lumen occurs, tissue degenerates to form a hollow tube once more
The dorsal border of the tube where stomach will form in the embryo, begins to dilate and form an enlarged lumen
Midgut grows in length as a loop extending ventrally, returning as hindgut
At the level of stomach, dorsal mesogastrium extends as a fold forming the greater omentum

4 4. In both the fetus and the adult, the celiac artery supplies:

Fetus: Foregut /Adult: Appendix
Fetus: Midgut /Adult: Respiratory tract
Fetus: Foregut /Adult: Esophagus
Fetus: Hindgut/Adult: Rectum


Mark Hill 12 October 2016 - These seem good quiz questions. Note that question 2 your answer says option 2 but it is actually 3 that you have shown as the correct answer. Assessment 5/5

Lab 5 Assessment

Questionnaire done

  1. <pubmed>19956794</pubmed>