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[[File:Mark Hill.jpg|thumb|Dr Mark Hill]]
[[File:Mark Hill.jpg|thumb|Dr Mark Hill]]


This current page is not a list of references, but a resource to help students and contributors format their page citations. An extension has been installed in this site that allows automatic reference formatting even if only the PubMed ID number is known.  
This current page introduces the concept of referencing on this Embryology website. An extension has been installed in this site that allows automatic reference formatting even if only the PubMed ID number is known. Students looking for a tutorial on how to add references to the website, should look at the [[Help:Reference_Tutorial|Reference Tutorial]].


Note that extremely new PubMed entries or those appearing in advance may not work with the automatic formatting and may need to be manually formatted as a ref. This appears to be something to do with how references are initially added/linked within the PubMed database and is generally resolved in a few weeks.
:'''Links:''' [[Embryology Textbooks]] | [[Help:Reference_Tutorial|Reference Tutorial]] | [[:Category:References]]


==Referencing on Pages==


:{{Template:Editing Links}}
'''Some Recent Findings''' - Show near the top of content pages after the "Introduction" section. These are new research articles, reviews, reports or findings that relate to that specific topic. Note this section is generally only updated when the page is being edited or related undergraduate teaching pages are being prepared.


==How to Insert Any Reference==
'''In Text Citations''' - are shown as numbered superscripts using and extension that allows automatic reference formatting using the PubMed ID. The actual reference format/layout has been structured by the site author and can be universally updated by changing a single file.


You are not restricted to using this automatic formatting, as any text enclosed by the tags:
'''References''' - Shown near the bottom of content pages. This is the formatted list of references that appear on that page. Links at the end of each reference include [http://www.ncbi.nlm.nih.gov/pubmed Pubmed], [http://www.ncbi.nlm.nih.gov/pmc Pubmed Central] and the original '''Journal''' if available.


:'''<nowiki><ref>your text here</ref></nowiki>'''
Will appear exactly as formatted in your reference list.
==How to Insert PubMed References==
This online site has an extension that allows automatic reference formatting if the PubMed ID number is known. Shown below is the code required to make the reference display correctly on your page. In addition, if the reference is cited more than once on a page there is specific code required to get the right citation list generated. At the bottom of this section is an example of how the code displays references.
Simply copy and paste the text shown in the examples below replacing XXXXX with the '''only the PubMed number''' (no text).
==Single Instance on Page==
Where the cited text, image or other referenced material appears place the following code:
:'''<nowiki><ref><pubmed>XXXXX</pubmed></ref></nowiki>'''
Then make a section towards the bottom of the page called "References" and place the following text below the heading
:'''<nowiki><references/></nowiki>'''
Shown below is an example of how a single citation will appear on the page and how the the reference list formats this citation. Note the reference list formatting is globally determined on this site and can be altered if required.
The human embryo development has been recently reviewed.<ref><pubmed>17304021</pubmed></ref>
===References===
<references/>
==Multiple Instances on Page==
If the material is cited multiple times upon a page, then it can appear as a single entry in you list if it is "named" in the first instance that it appears. Where the '''first cited''' text, image or other referenced material appears place the following code:
:'''<nowiki><ref name="PMIDXXXXX"><pubmed>XXXXX</pubmed></ref></nowiki>'''
Note the ref name must include the text PMID as a number alone is not allowed.
Future places where the above reference is cited place the following code:
:'''<nowiki><ref name="PMIDXXXXX "/></nowiki>'''
Shown below is an example of how a multiple citations will appear on the page and how the the reference list formats this citation. Note that a single page can have multiple reference lists, but I prefer a single list,  which will only contain references above the list.
The human embryo development has been recently reviewed.<ref name="PMID17304021"><pubmed>17304021</pubmed></ref> Now we can use the same citation later on the page using just the reference name code.<ref name="PMID17304021"/> Also see that no matter how many times we use this citation the numbering remains the same.<ref name="PMID17304021"/>
Note that if you reorganise page content, ensure that the first instance of the reference has the ref name tag '''<nowiki><ref name="PMIDXXXXX"></nowiki>'''.
===References===
<references/>
Now all you have to do is [http://www.ncbi.nlm.nih.gov/pubmed Search the PubMed database].


== Medline Database ==
== Medline Database ==
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* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."
* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."
==References==
<references/>




==External Links==
==External Links==


{{External Links}}
* [http://www.ncbi.nlm.nih.gov/pubmed PubMed]
* [http://citationmachine.net Son of Citation Machine] - This online citation tool was originally created by David Warlick of The Landmark Project on October 29, 2000
* [http://citationmachine.net Son of Citation Machine] - This online citation tool was originally created by David Warlick of The Landmark Project on October 29, 2000
and is part of the Landmarks for Schools Web site for teachers.
and is part of the Landmarks for Schools Web site for teachers.
{{Template:Glossary}}
{{Template:Glossary}}


{{Template:Footer}}
{{Template:Footer}}


[[Category:Help]] [[Category:References]]
[[Category:References]]

Revision as of 11:28, 9 November 2011

Introduction

Dr Mark Hill

This current page introduces the concept of referencing on this Embryology website. An extension has been installed in this site that allows automatic reference formatting even if only the PubMed ID number is known. Students looking for a tutorial on how to add references to the website, should look at the Reference Tutorial.

Links: Embryology Textbooks | Reference Tutorial | Category:References

Referencing on Pages

Some Recent Findings - Show near the top of content pages after the "Introduction" section. These are new research articles, reviews, reports or findings that relate to that specific topic. Note this section is generally only updated when the page is being edited or related undergraduate teaching pages are being prepared.

In Text Citations - are shown as numbered superscripts using and extension that allows automatic reference formatting using the PubMed ID. The actual reference format/layout has been structured by the site author and can be universally updated by changing a single file.

References - Shown near the bottom of content pages. This is the formatted list of references that appear on that page. Links at the end of each reference include Pubmed, Pubmed Central and the original Journal if available.


Medline Database

MEDLINE is a literature database of life sciences and biomedical information containing review and research articles. See also Project Referencing to generate references within your project, a reference list on your page and formatting the pubmed reference link.

  • Pubmed MEDLINE is the National Library of Medicine (NLM) USA premier bibliographic database covering the fields of medicine, nursing, dentistry, veterinary medicine, the health care system, and the preclinical sciences." (NCBI)
    • MH - I would prefer reference links to be added pointing to this database.
  • UNSW also has the MEDLINE database available through the Library using Sirius.
    • While it is essentially the same reference database, some papers will have different access rights based upon the university's subscriptions.

Searching with nearly any term will result in a large number of results that can be made more specific by either:

  1. Using "Preview/Index" option to carry out an additional search and then combining with your first result. (#1 AND #2) or
  2. Using "Limits" option to set limits on your search results. (review, years, english, etc)

OMIM Database

  • OMIM - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."


References


External Links

External Links Notice - The dynamic nature of the internet may mean that some of these listed links may no longer function. If the link no longer works search the web with the link text or name. Links to any external commercial sites are provided for information purposes only and should never be considered an endorsement. UNSW Embryology is provided as an educational resource with no clinical information or commercial affiliation.

and is part of the Landmarks for Schools Web site for teachers.

Glossary Links

Glossary: A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | Numbers | Symbols | Term Link

Cite this page: Hill, M.A. (2024, March 29) Embryology References. Retrieved from https://embryology.med.unsw.edu.au/embryology/index.php/References

What Links Here?
© Dr Mark Hill 2024, UNSW Embryology ISBN: 978 0 7334 2609 4 - UNSW CRICOS Provider Code No. 00098G