Molecular Development - Signaling

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Model of Sonic hedgehog signaling in the drosophila wing
Limb induction-initiation signaling

In current years we have turned from wanting to merely describe the events of embryogenesis, to a desire to understand the mechanisms of development. These notes are intended to introduce a number of different mechanisms at the cellular level and factors that form structures within the embryo. These cellular dynamic and physical interactions form basic tissue structures of epithelia, connective tissues and features such as tubes.

Template page - notice removed when completed.

Membrane Receptors Signaling between cells, cells and matrix, tissues, and systemically, is key to the developmental and differentiation process. While there are a large number of known methods of signaling these all fall into a few broad classes. Signaling also depends upon having an initial source for the signal and cells which can interpret the signal. To see how these mechanisms are employed you should look at embryo axes formation or the specific pages within each set of notes that refer to early development or system development (these pages are listed on Molecular Development homepage).

Cell cycle1.jpg

Some signals act internally (More? cell cycle) or over a short distance (between ajoining cells or to the cell itself), others act in a distance dependent manner (changing concentration of the signal will alter the response), others act by cascading (signaling from one cell to the next, to the next), and finally some signals act at a distance (between one tissue and a distant cell population).

Signaling in many cases precedes any observable change in cell shape and motility. Please note as an introduction the notes below have been extensively simplified. More details can be gained by clicking on the specific links below.

Molecular Links: molecular | genetics | epigenetics | mitosis | meiosis | X Inactivation | Signaling | Factors | Mouse Knockout | microRNA | Mechanisms | Developmental Enhancers | Protein | Genetic Abnormal | Category:Molecular

Factor Links: AMH | hCG | BMP | sonic hedgehog | bHLH | HOX | FGF | FOX | Hippo | LIM | Nanog | NGF | Nodal | Notch | PAX | retinoic acid | SIX | Slit2/Robo1 | SOX | TBX | TGF-beta | VEGF | WNT | Category:Molecular

Mechanism Links: mitosis | cell migration | cell junctions |epithelial invagination | epithelial mesenchymal transition | mesenchymal epithelial transition | epithelial mesenchymal interaction | morphodynamics | tube formation | apoptosis | autophagy | axes formation | time | molecular

Molecular Factors

  • BMP - Bone Morphogenetic Protein
  • hCG - human Chorionic Gonadotropin
  • FGF - Fibroblast Growth Factor
  • FOX - Forkhead bOX
  • HOX - Homeobox
  • PAX - "paired" (prd) with a box (homeodomain) domain.
  • NANOG - Tír na nÓg ("Land of the Young")
  • RA - Retinoic Acid
  • SHH - Sonic HedgeHog
  • SIX
  • Slit2/Robo1
  • SOX
  • TBX
  • TGF-beta - Transforming Growth Factor - beta
  • VEGF - Vascular Endothelial Growth Factor
  • WNT - Wingless and iNT
Human BMP Family  
Table - Human Bmp Family
Approved Name Previous
Synonyms Chromosome
BMP1 bone morphogenetic protein 1 PCOLC 8p21.3
BMP2 bone morphogenetic protein 2 BMP2A 20p12.3
BMP3 bone morphogenetic protein 3 4q21.21
BMP4 bone morphogenetic protein 4 BMP2B 14q22.2
BMP5 bone morphogenetic protein 5 6p12.1
BMP6 bone morphogenetic protein 6 VGR VGR1 6p24.3
BMP7 bone morphogenetic protein 7 OP-1 20q13.31
BMP8A bone morphogenetic protein 8a 1p34.3
BMP8B bone morphogenetic protein 8b BMP8 OP-2 1p34.2
BMP10 bone morphogenetic protein 10 2p13.3
BMP15 bone morphogenetic protein 15 GDF9B Xp11.22
    Links: Developmental Signals - Bone Morphogenetic Protein | OMIM BMP2 | HGNC | Bmp Family | Sox Family | Tbx Family
Human FGF Family  
Table - Human Fibroblast Growth Factor Family FGF
Approved Name Previous
Synonyms Chromosome
FGF1 fibroblast growth factor 1 FGFA "AFGF, ECGF, ECGFA, ECGFB, HBGF1, ECGF-beta, FGF-alpha, GLIO703" 5q31.3
FGF2 fibroblast growth factor 2 FGFB 4q28.1
FGF4 fibroblast growth factor 4 HSTF1 "K-FGF, HBGF-4, HST, HST-1, KFGF" 11q13.3
FGF5 fibroblast growth factor 5 4q21.21
FGF6 fibroblast growth factor 6 12p13.32
FGF7 fibroblast growth factor 7 KGF 15q21.2
FGF8 fibroblast growth factor 8 AIGF 10q24.32
FGF9 fibroblast growth factor 9 13q12.11
    Links: Developmental Signals - Fibroblast Growth Factor | OMIM Fgf1 | HGNC | Bmp Family | Fgf Family | Sox Family | Tbx Family
Human Hedgehog Family  
Table - Human Hedgehog Family
Approved Name Previous
Synonyms Chromosome
DHH desert hedgehog "HHG-3, MGC35145" 12q13.12
IHH indian hedgehog "HHG2, BDA1" 2q35
SHH sonic hedgehog "HPE3, HLP3" "HHG1, SMMCI, TPT, TPTPS, MCOPCB5" 7q36.3
    Links: sonic hedgehog | OMIM Fgf1 | HGNC | Bmp Family | Fgf Family | Hedgehog Family | Sox Family | Tbx Family
Human SOX Family  
Table - Human Sox Family
Approved Name Previous Symbols Synonyms Chromosome
SOX1 SRY-box 1 13q34
SOX2 SRY-box 2 3q26.33
SOX3 SRY-box 3 PHP Xq27.1
SOX4 SRY-box 4 6p22.3
SOX5 SRY-box 5 "L-SOX5, MGC35153" 12p12.1
SOX6 SRY-box 6 11p15.3
SOX7 SRY-box 7 8p23.1
SOX8 SRY-box 8 16p13.3
SOX9 SRY-box 9 "CMD1, CMPD1" SRA1 17q24.3
SOX10 SRY-box 10 "DOM, WS4, WS2E" 22q13.1
SOX11 SRY-box 11 2p25.2
SOX12 SRY-box 12 SOX22 20p13
SOX13 SRY-box 13 "Sox-13, ICA12, MGC117216" 1q32.1
SOX14 SRY-box 14 SOX28 3q22.3
SOX15 SRY-box 15 SOX20 "SOX27, SOX26" 17p13.1
SOX17 SRY-box 17 8q11.23
SOX18 SRY-box 18 20q13.33
SOX21 SRY-box 21 SOX25 13q32.1
SOX30 SRY-box 30 5q33.3
SRY sex determining region Y TDF Yp11.2
    Links: Developmental Signals - Sox | OMIM | HGNC | Tbx Family | Bmp Family | Fgf Family | Pax Family | R-spondin Family | Sox Family | Tbx Family
Human TBX Family  
Table - Human Tbx Family
Approved Name Previous Symbols Synonyms Chromosome
TBX1 T-box 1 VCF CATCH22 22q11.21
TBX2 T-box 2 17q23.2
TBX3 T-box 3 UMS "TBX3-ISO, XHL" 12q24.21
TBX4 T-box 4 17q23.2
TBX5 T-box 5 HOS 12q24.21
TBX6 T-box 6 16p11.2
TBX10 T-box 10 TBX7 TBX13 11q13.2
TBX15 T-box 15 TBX14 1p12
TBX18 T-box 18 6q14.3
TBX19 T-box 19 "dj747L4.1, TPIT" 1q24.2
TBX20 T-box 20 7p14.2
TBX21 T-box 21 "TBLYM, T-bet" 17q21.32
TBX22 T-box 22 "CPX, CLPA" Xq21.1
TBX23P T-box 23, pseudogene TBX23 1q25
TBR1 T-box, brain 1 2q24.2
EOMES eomesodermin TBR2 3p24.1
MGA MGA, MAX dimerization protein "KIAA0518, MAD5, MXD5, FLJ12634" 15q15
TBXT T-box transcription factor T T 6q27
    Links: Developmental Signals - Tbx | OMIM Tbx3 | HGNC | Bmp Family | Sox Family | Tbx Family
Factor Links: AMH | hCG | BMP | sonic hedgehog | bHLH | HOX | FGF | FOX | Hippo | LIM | Nanog | NGF | Nodal | Notch | PAX | retinoic acid | SIX | Slit2/Robo1 | SOX | TBX | TGF-beta | VEGF | WNT | Category:Molecular


  • cell cycle- position in cell cycle, proliferative rate, post-mitotic
  • time- position in cell cycle, cell death (apoptosis)
  • adhesive interactions- cell/cell, cell/extracellular matrix
  • transcription factors- Hox, bHLH, zinc finger,
  • protein growth factors- VEGF, FGF, NGF, GDNF, TGFb
  • steroidal growth factors- RA, TH,
  • extracellular matrix proteins- Wnt7a, laminin, fibronectin
  • ion signaling- calcium




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Cite this page: Hill, M.A. (2021, February 27) Embryology Molecular Development - Signaling. Retrieved from

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© Dr Mark Hill 2021, UNSW Embryology ISBN: 978 0 7334 2609 4 - UNSW CRICOS Provider Code No. 00098G