Difference between revisions of "Digital Histology"

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==Introduction==
 
==Introduction==
UNSW Histology slides have been scanned and digitised mainly using an Aperio ScanScope XT and displayed online using Virtual Microscope.
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UNSW Histology slide collections have been scanned and digitised and available online as [http://vslides.unsw.edu.au/VirtualSlideV2.nsf Virtual Slides] (requires login). Slides were scanned with a variety of commercial scanners. For example, within the HMU using an Aperio ScanScope XT allowing an image capture resolution at 20x magnification of 0.50 µm/pixel and at 40x magnification of 0.25 µm/pixel.
  
* [http://vslides.unsw.edu.au/VirtualSlideV2.nsf Virtual Slides]
 
  
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{{Histology Links}}
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==Image Formats==
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* Tiff (.tif), jpg and jpg2000
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* Hamamatsu (.ndpi)
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* Aperio (.svs)
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* Zeiss (.mrxs)
  
{{Histology Links}}
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Example - virtual slide 5 x 10 mm of tissue scanned at x40 magnification generates a file size about 1GB.
 
==External Links==
 
==External Links==
 
{{External Links}}
 
{{External Links}}
  
 
* UNSW [http://medicalsciences.med.unsw.edu.au/research/research-services/histology-microscopy-unit/overview SOMS HMU] | [http://medicalsciences.med.unsw.edu.au/research/research-services/histology-microscopy-unit/services/digital-slide-scanning-service HMU Digital Slide Scanning] | [http://149.171.80.217/ eSlide Manager]  
 
* UNSW [http://medicalsciences.med.unsw.edu.au/research/research-services/histology-microscopy-unit/overview SOMS HMU] | [http://medicalsciences.med.unsw.edu.au/research/research-services/histology-microscopy-unit/services/digital-slide-scanning-service HMU Digital Slide Scanning] | [http://149.171.80.217/ eSlide Manager]  
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* [http://www.path.uiowa.edu/virtualslidebox/ Virtual Slidebox]
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* [http://openslide.org Openslide] | [http://openslide.org/demo/ Demo]
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* [http://openseadragon.github.io OpenSeadragon] - An open-source, web-based viewer for zoomable images, implemented in pure JavaScript.
 
* [http://www.aperio.com/services/slide Aperio] | [http://www.aperio.com/lifescience/capture Aperio ScanScope XT] | [https://itunes.apple.com/us/app/aperio-epathviewer-for-ipad/id495328213?mt=8 iPad Viewer]
 
* [http://www.aperio.com/services/slide Aperio] | [http://www.aperio.com/lifescience/capture Aperio ScanScope XT] | [https://itunes.apple.com/us/app/aperio-epathviewer-for-ipad/id495328213?mt=8 iPad Viewer]
** Aperio Image Capture Resolution 20x - 0.50 µm/pixel; 40x - 0.25 µm/pixel
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* [http://www.olympusamerica.com/seg_section/seg_microscopes.asp?section=virtual Olympus]
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{{Glossary}}
 
{{Glossary}}

Latest revision as of 19:29, 9 August 2013

Page Notice - Mark Hill

This online page is currently only a template placeholder and when updated this notice is removed.

Introduction

UNSW Histology slide collections have been scanned and digitised and available online as Virtual Slides (requires login). Slides were scanned with a variety of commercial scanners. For example, within the HMU using an Aperio ScanScope XT allowing an image capture resolution at 20x magnification of 0.50 µm/pixel and at 40x magnification of 0.25 µm/pixel.


Histology Links: stains | fixatives | artifacts | menstrual histology | placenta histology | heart histology | liver histology | Pancreas | Gall Bladder | Colon | Renal | Respiratory Histology | Bone | Category:Histology | UNSW Histology
  Historic Histology Textbooks: 1941 Histology] | 1944 Oral Histology
Histology Glossary: A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | ANAT2241 Support | Histology | Histology Stains | Embryology Glossary

Image Formats

  • Tiff (.tif), jpg and jpg2000
  • Hamamatsu (.ndpi)
  • Aperio (.svs)
  • Zeiss (.mrxs)

Example - virtual slide 5 x 10 mm of tissue scanned at x40 magnification generates a file size about 1GB.

External Links

External Links Notice - The dynamic nature of the internet may mean that some of these listed links may no longer function. If the link no longer works search the web with the link text or name. Links to any external commercial sites are provided for information purposes only and should never be considered an endorsement. UNSW Embryology is provided as an educational resource with no clinical information or commercial affiliation.



Glossary Links

Glossary: A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z | Numbers | Symbols | Term Link

Cite this page: Hill, M.A. (2021, October 25) Embryology Digital Histology. Retrieved from https://embryology.med.unsw.edu.au/embryology/index.php/Digital_Histology

What Links Here?
© Dr Mark Hill 2021, UNSW Embryology ISBN: 978 0 7334 2609 4 - UNSW CRICOS Provider Code No. 00098G