ANAT2341 Lab 3: Difference between revisions

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{{Header}}
==1. QUIZ==
==1. QUIZ==


==2. Mark Hill (UNSW) – Group Projects==
[[File:Chicken.jpeg|180px]]
 
 
Today you will be sitting with your fellow group members during the lab class, look for your group number on the benches.
 
# Select group topic and access project discussion page. (Add your signature to the discussion page)
# Allocate initial research areas. (these may change over time)
# Commence online topic research. ([[Template:Journal Searches|Journal Searches]])
 
 
{{2018ANAT2341ProjectHeader}}
 
 
[[2018 Test Student]]
 
===Main Topic===
[[File:Stage11 sem21.jpg|thumb|300px|alt=Human embryo week 4 neural crest cells|Human embryo neural crest cells ([[Week 4]], Carnegie stage {{CS11}})]]
The term "neural crest was first used in {{Ref-Marshall1879}}.
 
* {{Neural crest}} derived structures.


==2. Gastrulation, early somitogenesis and neurulation lab - early chicken eggs ==


From the main topic, each group will select their own sub-topic. Below are the existing online information pages.
The chicken (Gallus gallus) embryo is an excellent model for the study of early vertebrate embryogenesis and later organogenesis. The embryo is encased within a hardened eggshell which provides a natural incubator or culture dish. Through a hole in the eggshell, the embryo can be visualized and easily manipulated with microsurgical tools or gene constructs, then allowed to continue development in ovo to determine the consequence of the experimental manipulation.


Fertilized chicken eggs are readily available anywhere in the world and the equipment needed is minimal – a humidified incubator (39oC, no CO2 required), a dissecting microscope, microsurgical tools that can be prepared in the lab or purchased, and either a hand-held mouth pipette or a manufactured micromanipulator and picospritzer.


====Neural Crest====
Fertilized eggs can be held at between 13-16oC for up to 1 week prior to incubation. They are incubated at 38ºC-39ºC to the desired stage in a humidified incubator with the eggs placed on their side (horizontal). For long-term post-operative survival, it is best that the eggs be left in the incubator until experimental manipulation. However, eggs can be removed from the incubator and held at room temperature to slow development.
{{Neural Crest Links}}


{{Neural Crest table}}
For staging of chicken embryos: https://embryology.med.unsw.edu.au/embryology/index.php/Hamburger_Hamilton_Stages


<br><br>
<references/>


===Online Research Database===
'''SAFE WORKING PROCEDURES AND ANIMAL ETHICS'''
[[File:PubMed logo.gif|link=http://www.ncbi.nlm.nih.gov/pubmed|right|150px]]
* The online projects generally as a main source the [http://www.ncbi.nlm.nih.gov/pubmed PubMed] database.
** "PubMed comprises over 28 million citations for biomedical literature from MEDLINE, life science journals, and online books."
** [[Template:Journal Searches|Journal Searches]] | [https://www.ncbi.nlm.nih.gov/books/NBK3827/#pubmedhelp.PubMed_Quick_Start PubMed - Quick Start]


'''Risks Associated with Practical'''
Eggs have the potential to be contaminated with the bacteria Salmonella. Wear gloves throughout and students should always wash their hands before leaving the lab.
Dissection implements are sharp, so students should take care not to cut themselves or other students.


<br>
Students should wear a lab coat, gloves and enclosed shoes to protect themselves from egg splatter.
{| class="wikitable mw-collapsible mw-collapsed"
! About Journal Searches &nbsp;
|-
| The following general information is about the above online databases and journals.
{{External Links}}


* [http://www.ncbi.nlm.nih.gov/pubmed '''PubMed'''] - comprises more than 24 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites.
'''Animal Ethics Compliance'''
** [http://www.ncbi.nlm.nih.gov/pmc PubMed Central] (PMC) - is a free full-text archive of biomedical and life sciences journal literature at the U.S. National Institutes of Health's National Library of Medicine (NIH/NLM).
The procedures used in this practicum are in compliance with the UNSW Animal Care and Ethics Committee and the National Health and Medical Research Council ‘Australian code of practice (8th edition, 2013).
* [https://www.plos.org '''Public Library of Science'''] (PLOS) - is a nonprofit publisher and advocacy organization founded to accelerate progress in science and medicine by leading a transformation in research communication.
** PLOS Journals - [http://www.plosone.org/ PLOS ONE] | [http://www.plosbiology.org PLOS Biology] | [http://www.plosmedicine.org PLOS Medicine] | [http://www.plosgenetics.org PLOS Genetics] | [http://www.ploscompbiol.org PLOS Computational Biology] | [http://www.plospathogens.org PLOS Pathogens] | [http://www.plosntds.org PLOS Neglected Tropical Diseases]
* [http://www.biomedcentral.com '''BioMed Central'''] (BMC) - is an STM (Science, Technology and Medicine) publisher of 291 peer-reviewed open access journals.
** [http://www.biomedcentral.com/bmcdevbiol BMC Developmental Biology] - is an open access, peer-reviewed journal that considers articles on the development, growth, differentiation and regeneration of multicellular organisms, including molecular, cellular, tissue, organ and whole organism research.
** [http://www.reproductive-health-journal.com Reproductive Health] - is an open access, peer-reviewed online journal focusing on all aspects of human reproduction.
** [http://www.rbej.com Reproductive Biology and Endocrinology] (RB&E) - aims to act as a forum for the dissemination of results from excellent research in the reproductive sciences. RB&E represents a global platform for reproductive and developmental biologists, reproductive endocrinologists, immunologists, theriogenologists, infertility specialists, obstetricians, gynecologists, andrologists, urogynecologists, specialists in menopause, reproductive tract oncologists, and reproductive epidemiologists.
* [http://bio.biologists.org '''Biology Open'''] (BiO) - is an online-only Open Access journal that publishes peer-reviewed original research across all aspects of the biological sciences, including cell science, developmental biology and experimental biology.  
|}


===Searching===


PubMed Reference Search - [https://www.ncbi.nlm.nih.gov/search/?term=neural+crest neural crest]
'''EXPERIMENTAL PROCEDURES'''
<br>
Code:


<nowiki>PubMed Reference Search - [https://www.ncbi.nlm.nih.gov/search/?term=neural+crest neural crest]</nowiki>
'''Opening of the egg'''


1. Eggs were incubated for several days at 38.5°C to generate embryos that undergo organogenesis.


PMC Image Search - [http://www.ncbi.nlm.nih.gov/pmc/?term=neural+crest&report=imagesdocsum neural crest]
2. Each student pair should have one egg and an an egg holder, a pair of blunt forceps and a pair of scissors, 3 petridishes, PBS, disposable pipet, syringe and 23G needle, Indian ink solution, dissection microscope.
<br>
Code:


<nowiki>PMC Image Search - [http://www.ncbi.nlm.nih.gov/pmc/?term=neural+crest&report=imagesdocsum neural crest]</nowiki>
3. Put the egg into the holder with the blunt end up (pointed end down).


4. Use the pointy end of the scissors to tap a hole in the top of the egg into the air chamber, be very careful not to push the scissors too far into the egg.


<pubmed limit=5>Neural Crest Embryology</pubmed>
5. Use the forceps to pick bits of shell out. Do not remove egg shell beyond the air chamber. You will see the air chamber and the vitelline membrane.


<br>
6. Carefully remove the vitelline membrane at the top.
Code:


<nowiki><pubmed limit=5>Neural Crest Embryology</pubmed></nowiki>
7. If you do not see the embryo (a ring of blood vessels should be visible) then gently swirl the egg so that it floats up to the top of the yolk. If this doesn’t work you will need to take another egg if available.


===Citing Published Papers===
8. Use the forceps to break off pieces of shell down to the yolk so that the embryo (visible as a ring of blood vessels) is exposed and the rim of the shell is just above the surface of the egg white or albumen.
You must clearly separate these 2 types of papers when citing on the project page. Hint - PubMed indicates when the paper is a review.


# '''Research paper''' is based on original research.  
9. You may be able to see the heart beating without magnification. If not, then put the egg under the dissection microscope.  
# '''Review paper''' is based on other published articles. It does not report original research and generally summarize the existing literature on a topic in an attempt to explain the current state of understanding on the topic.




Any stated finding on your project page, must cite a research paper(s).
'''Early stage somitogenesis embryos'''


Any paper that usefully summarises a research topic (a review), must indicate in the text that the citation is a review.
1. Draw Indian Ink solution (if available) up into a 1 ml syringe fitted with a 23G syringe needle.


:For example: "see review", "as reviewed by", "best summarised by the review"......
2. Open an egg as described above. Once the shell has been removed down to the level of the yolk and the vitelline membrane has been removed, slide the syringe needle under the  


3. embryo. It is easiest to insert the syringe needle vertically at the edge of the egg initially and then rotate the needle until it is almost horizontal using the edge of the egg shell as a support. The tip of the needle should end up just below the embryo in the centre of the egg.


Alternatively, consider a subheading that lists just the reviews in some sequence/topic.
4. Slowly inject the Indian ink solution to reveal the embryo and view under a dissecting microscope.


Here is an example of a recent neural crest review article.{{#pmid:26970616|PMID26970616}}
5. Identify the HH stage and the diverse embryonic structures. See last page or link below.
https://embryology.med.unsw.edu.au/embryology/index.php/Hamburger_Hamilton_Stages


<br><br>
6. Draw your embryo, indicate the Hamburger & Hamilton (HH) developmental stages using the guide on course manual pages 22-24, and annotate the embryonic structures that you have identified.
<references/>


===Project Structure===
7. Hand your drawing in at the end of the prac.


# Begin by looking at previous project pages and see which structure/organisation appears best to you.
# Add suggested sub-headings to the project page and see if the organisation makes sense.
# Remember that sub-heading structure can be changed at any time or "undo" to an earlier structure (note if you "undo" all later version changes will be lost).
<br><br>
Here are some useful concepts to consider including (listed in no specific order):


* introduction
'''Observation of developmental stages'''
* history
* embryonic origins
* developmental time course
* developmental/adult function
* tissue/organ structure
* molecular mechanisms/factors/genes
* abnormalities/abnormal development
* animal models
* current research (labs)
* glossary
* reference list
<br><br><br><br>


Move around the class to study the embryonic chicken stages of your colleagues. Identify the following structures:


- Amniotic sac
- Hensen’s node
- Neural groove and folds
- Head ectoderm
- Somites
- Brain vesicles
- Cardiogenic mesoderm
- Heart and vasculature


{{Editing Links}}


{{2018ANAT2341}}
'''Tidying up after the prac'''
- Please discard egg waste and disposable consumables into the yellow bins (not the paper bins).
- Dispose of Syringes and needles in sharps bins
- Wash forceps and scissors with water, and wipe with ethanol, place in provided containers on the sink.
- Clean surfaces (microscope stages, benches) with water and ethanol, and wipe dry.

Revision as of 10:10, 24 June 2019

1. QUIZ

Chicken.jpeg

2. Gastrulation, early somitogenesis and neurulation lab - early chicken eggs

The chicken (Gallus gallus) embryo is an excellent model for the study of early vertebrate embryogenesis and later organogenesis. The embryo is encased within a hardened eggshell which provides a natural incubator or culture dish. Through a hole in the eggshell, the embryo can be visualized and easily manipulated with microsurgical tools or gene constructs, then allowed to continue development in ovo to determine the consequence of the experimental manipulation.

Fertilized chicken eggs are readily available anywhere in the world and the equipment needed is minimal – a humidified incubator (39oC, no CO2 required), a dissecting microscope, microsurgical tools that can be prepared in the lab or purchased, and either a hand-held mouth pipette or a manufactured micromanipulator and picospritzer.

Fertilized eggs can be held at between 13-16oC for up to 1 week prior to incubation. They are incubated at 38ºC-39ºC to the desired stage in a humidified incubator with the eggs placed on their side (horizontal). For long-term post-operative survival, it is best that the eggs be left in the incubator until experimental manipulation. However, eggs can be removed from the incubator and held at room temperature to slow development.

For staging of chicken embryos: https://embryology.med.unsw.edu.au/embryology/index.php/Hamburger_Hamilton_Stages


SAFE WORKING PROCEDURES AND ANIMAL ETHICS

Risks Associated with Practical Eggs have the potential to be contaminated with the bacteria Salmonella. Wear gloves throughout and students should always wash their hands before leaving the lab.

Dissection implements are sharp, so students should take care not to cut themselves or other students.

Students should wear a lab coat, gloves and enclosed shoes to protect themselves from egg splatter.

Animal Ethics Compliance The procedures used in this practicum are in compliance with the UNSW Animal Care and Ethics Committee and the National Health and Medical Research Council ‘Australian code of practice (8th edition, 2013).


EXPERIMENTAL PROCEDURES

Opening of the egg

1. Eggs were incubated for several days at 38.5°C to generate embryos that undergo organogenesis.

2. Each student pair should have one egg and an an egg holder, a pair of blunt forceps and a pair of scissors, 3 petridishes, PBS, disposable pipet, syringe and 23G needle, Indian ink solution, dissection microscope.

3. Put the egg into the holder with the blunt end up (pointed end down).

4. Use the pointy end of the scissors to tap a hole in the top of the egg into the air chamber, be very careful not to push the scissors too far into the egg.

5. Use the forceps to pick bits of shell out. Do not remove egg shell beyond the air chamber. You will see the air chamber and the vitelline membrane.

6. Carefully remove the vitelline membrane at the top.

7. If you do not see the embryo (a ring of blood vessels should be visible) then gently swirl the egg so that it floats up to the top of the yolk. If this doesn’t work you will need to take another egg if available.

8. Use the forceps to break off pieces of shell down to the yolk so that the embryo (visible as a ring of blood vessels) is exposed and the rim of the shell is just above the surface of the egg white or albumen.

9. You may be able to see the heart beating without magnification. If not, then put the egg under the dissection microscope.


Early stage somitogenesis embryos

1. Draw Indian Ink solution (if available) up into a 1 ml syringe fitted with a 23G syringe needle.

2. Open an egg as described above. Once the shell has been removed down to the level of the yolk and the vitelline membrane has been removed, slide the syringe needle under the

3. embryo. It is easiest to insert the syringe needle vertically at the edge of the egg initially and then rotate the needle until it is almost horizontal using the edge of the egg shell as a support. The tip of the needle should end up just below the embryo in the centre of the egg.

4. Slowly inject the Indian ink solution to reveal the embryo and view under a dissecting microscope.

5. Identify the HH stage and the diverse embryonic structures. See last page or link below. https://embryology.med.unsw.edu.au/embryology/index.php/Hamburger_Hamilton_Stages

6. Draw your embryo, indicate the Hamburger & Hamilton (HH) developmental stages using the guide on course manual pages 22-24, and annotate the embryonic structures that you have identified.

7. Hand your drawing in at the end of the prac.


Observation of developmental stages

Move around the class to study the embryonic chicken stages of your colleagues. Identify the following structures:

- Amniotic sac - Hensen’s node - Neural groove and folds - Head ectoderm - Somites - Brain vesicles - Cardiogenic mesoderm - Heart and vasculature


Tidying up after the prac - Please discard egg waste and disposable consumables into the yellow bins (not the paper bins). - Dispose of Syringes and needles in sharps bins - Wash forceps and scissors with water, and wipe with ethanol, place in provided containers on the sink. - Clean surfaces (microscope stages, benches) with water and ethanol, and wipe dry.