Help:Reference Tutorial - Revision history

Z8600021 at 23:02, 19 March 2018

2018-03-19T23:02:58Z

← Older revision		Revision as of 09:02, 20 March 2018
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	* You will be able to enter the complete reference manually later.		* You will be able to enter the complete reference manually later.

	~~==Simple Referencing==~~

	~~OK so all the above is too hard? Simply pasting the text of the PMID on the page is sufficient to generate a link to the PubMed reference.~~

	~~The text PMID 17304021 alone without any other formatting can also act as a temporary link until you format reference correctly.~~


	~~This can also be enclosed within a referencing code, but will not format the reference only your link text.~~

	== Medline Database ==		== Medline Database ==
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	== OMIM Database ==		== OMIM Database ==

	* [~~http~~://www.~~ncbi~~.~~nlm.nih.gov/sites/entrez?db=omim~~ OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."		* [https://www.omim.org OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."

			Note OMIM web entry addresses have recently been shifted from PubMed to omim.org

	==Referencing Templates==		==Referencing Templates==

Z8600021 at 23:00, 19 March 2018

2018-03-19T23:00:04Z

← Older revision		Revision as of 09:00, 20 March 2018
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	Shown below is an example of how a multiple citations will appear on the page and how the the reference list formats this citation. Note that a single page can have multiple reference lists, but I prefer a single list, which will only contain references above the list.		Shown below is an example of how a multiple citations will appear on the page and how the the reference list formats this citation. Note that a single page can have multiple reference lists, but I prefer a single list, which will only contain references above the list.

	The human embryo development has been recently reviewed.~~<ref name="~~PMID17304021~~"><pubmed>17304021</pubmed></ref>~~ Now we can use the same citation later on the page using just the reference name code.<ref name="PMID17304021"/> Also see that no matter how many times we use this citation the numbering remains the same.<ref name="PMID17304021"/>		The human embryo development has been recently reviewed.{{#pmid:17304021\|PMID17304021}} Now we can use the same citation later on the page using just the reference name code.<ref name="PMID17304021"/> Also see that no matter how many times we use this citation the numbering remains the same.<ref name="PMID17304021"/>

	Note that if you reorganise page content, ensure that the first instance of the reference has the ref name tag '''<nowiki><ref name="PMIDXXXXX"></nowiki>'''.		Note that if you reorganise page content, ensure that the first instance of the reference has the ref name tag '''<nowiki><ref name="PMIDXXXXX"></nowiki>'''.

Z8600021 at 00:09, 15 February 2018

2018-02-15T00:09:40Z

← Older revision		Revision as of 10:09, 15 February 2018
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	Wiki Code		Wiki Code
	* In-text citation (superscript number): <nowiki>{{#pmid:17304021\|PMID17304021}}</nowiki>		* In-text citation (superscript number):
	* Reference list: <nowiki>{{#pmid:17304021}}</nowiki>		<nowiki>{{#pmid:17304021\|PMID17304021}}</nowiki>
			* In-text multiple citation (superscript same number):
			<nowiki><ref name="PMID17304021" /></nowiki>
			* Reference list:
			<nowiki>{{#pmid:17304021}}</nowiki>

Z8600021 at 00:05, 15 February 2018

2018-02-15T00:05:46Z

← Older revision		Revision as of 10:05, 15 February 2018
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			[[User:Z8600021\|Mark Hill]] ([[User talk:Z8600021\|talk]]) 10:58, 15 February 2018 (AEDT) Implemented new extension [https://www.mediawiki.org/wiki/Extension:PubmedParser PubmedParser] will eventually replace original extension [http://www.mediawiki.org/wiki/Extension:Pubmed Pubmed]. Allows easier reference formatting changes (now APA) and local cache settings.

	~~''Note - 2018 Update to format. This page will be updated~~ - ~~Notice removed when completed.~~		Wiki Code
	''		* In-text citation (superscript number): <nowiki>{{#pmid:17304021\|PMID17304021}}</nowiki>
			* Reference list: <nowiki>{{#pmid:17304021}}</nowiki>


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	If you do want the reference to appear as the full PubMed formatted reference at a specific location on a page simply use the tags:		If you do want the reference to appear as the full PubMed formatted reference at a specific location on a page simply use the tags:

	:'''<nowiki>~~<pubmed>XXXXX</pubmed>~~</nowiki>'''		:'''<nowiki>{{#pmid:17304021}}</nowiki>'''

	For example:		For example:

	~~<pubmed>~~17304021~~</pubmed>~~		{{#pmid:17304021}}



	If you want the reference to appear as a PMID external link, simply use the text PMID XXXX. (note there should be a space but no colon between the text and the number).		If you want the reference to appear as a PMID external link, simply use the text PMID XXXX. (note there should be a space but no colon between the text and the number).
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	Where the cited text, image or other referenced material appears place the following code:		Where the cited text, image or other referenced material appears place the following code:

	:'''<nowiki>~~<ref><pubmed>XXXXX</pubmed></ref>~~</nowiki>'''		:'''<nowiki>{{#pmid:XXXXX1\|PMIDXXXXX}}</nowiki>'''

	Then make a section towards the bottom of the page called "References" and place the following text below the heading		Then make a section towards the bottom of the page called "References" and place the following text below the heading
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	Shown below is an example of how a single citation will appear on the page and how the the reference list formats this citation. Note the reference list formatting is globally determined on this site and can be altered if required.		Shown below is an example of how a single citation will appear on the page and how the the reference list formats this citation. Note the reference list formatting is globally determined on this site and can be altered if required.

	The human embryo development has been recently reviewed.~~<ref><pubmed>~~17304021~~</pubmed></ref>~~		The human embryo development has been recently reviewed.{{#pmid:17304021\|PMID17304021}}

	===References===		===References===
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	If the material is cited multiple times upon a page, then it can appear as a single entry in you list if it is "named" in the first instance that it appears. Where the '''first cited''' text, image or other referenced material appears place the following code:		If the material is cited multiple times upon a page, then it can appear as a single entry in you list if it is "named" in the first instance that it appears. Where the '''first cited''' text, image or other referenced material appears place the following code:

	:'''<nowiki>~~<ref name="~~PMIDXXXXX~~"><pubmed>XXXXX</pubmed></ref>~~</nowiki>'''		:'''<nowiki>{{#pmid:XXXXX\|PMIDXXXXX}}</nowiki>'''

	Note the ref name must include the text PMID as a number alone is not allowed.		Note the ref name must include the text PMID as a number alone is not allowed.

Z8600021 at 00:00, 15 February 2018

2018-02-15T00:00:20Z

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 There is a separate page describing how references appear on this website. (More? [[References]])
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 ===PubMed Parser===
 Used to format references as they appear on the page (APA style). Note that historic references do not use this template or format.

Z8600021 at 03:51, 8 February 2018

2018-02-08T03:51:10Z

← Older revision		Revision as of 13:51, 8 February 2018
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	===PubMed Parser===		===PubMed Parser===
			Used to format references as they appear on the page (APA style). Note that historic references do not use this template or format.


			{{Pubmed}}

			Code:

	<nowiki>{{Pubmed}}</nowiki>		<nowiki>{{Pubmed}}</nowiki>

Z8600021 at 03:49, 8 February 2018

2018-02-08T03:49:41Z

← Older revision		Revision as of 13:49, 8 February 2018
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	==Referencing Templates==		==Referencing Templates==
	Note these are protected draft templates, not for general (student) usage.		Note these are protected draft templates, not for general (student) usage.

			===PubMed Parser===

			<nowiki>{{Pubmed}}</nowiki>

	===References footer===		===References footer===

Z8600021 at 23:03, 13 March 2017

2017-03-13T23:03:45Z

← Older revision		Revision as of 09:03, 14 March 2017
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	===References footer===		===References footer===
	This footer is a "container" that ~~currently only~~ has the NCBI disclaimer copyright template, ~~but~~ can be updated if required to contain additional reference information.		This footer is a "container" that has the NCBI disclaimer copyright template, and a link to this current Help page. This template can be updated if required to contain additional reference information.

			Code:

	<nowiki>{{References footer}}</nowiki>		<nowiki>{{References footer}}</nowiki>

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	:"Information that is created by or for the US government on this site is within the public domain. Public domain information on the National Library of Medicine (NLM) Web pages may be freely distributed and copied. However, it is requested that in any subsequent use of this work, NLM be given appropriate acknowledgment."		:"Information that is created by or for the US government on this site is within the public domain. Public domain information on the National Library of Medicine (NLM) Web pages may be freely distributed and copied. However, it is requested that in any subsequent use of this work, NLM be given appropriate acknowledgment."


			Code:

	<nowiki>{{NCBI disclaimer copyright}}</nowiki>		<nowiki>{{NCBI disclaimer copyright}}</nowiki>
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	{{NCBI disclaimer copyright}}		{{NCBI disclaimer copyright}}



	==External Links==		==External Links==

Z8600021 at 22:58, 13 March 2017

2017-03-13T22:58:54Z

← Older revision		Revision as of 08:58, 14 March 2017
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	* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."		* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."

	===Templates===		==Referencing Templates==
			Note these are protected draft templates, not for general (student) usage.

			===References footer===
			This footer is a "container" that currently only has the NCBI disclaimer copyright template, but can be updated if required to contain additional reference information.
			<nowiki>{{References footer}}</nowiki>

			Produces the following text and links:

			{{References footer}}

			===NCBI disclaimer copyright===
	NCBI Website and Data Usage Policies and Disclaimers - the template below can be used at the bottom of pages containing a list of references and complies with the NCBI policy of displaying an acknowledgement linked to the NCBI page and a link to the Pubmed state page.		NCBI Website and Data Usage Policies and Disclaimers - the template below can be used at the bottom of pages containing a list of references and complies with the NCBI policy of displaying an acknowledgement linked to the NCBI page and a link to the Pubmed state page.

Z8600021 at 22:42, 13 March 2017

2017-03-13T22:42:06Z

← Older revision		Revision as of 08:42, 14 March 2017
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	* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."		* [http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim OMIM] - "OMIM is a comprehensive, authoritative, and timely compendium of human genes and genetic phenotypes. The full-text, referenced overviews in OMIM contain information on all known mendelian disorders and over 12,000 genes. OMIM focuses on the relationship between phenotype and genotype."

			===Templates===

			NCBI Website and Data Usage Policies and Disclaimers - the template below can be used at the bottom of pages containing a list of references and complies with the NCBI policy of displaying an acknowledgement linked to the NCBI page and a link to the Pubmed state page.

			:"Information that is created by or for the US government on this site is within the public domain. Public domain information on the National Library of Medicine (NLM) Web pages may be freely distributed and copied. However, it is requested that in any subsequent use of this work, NLM be given appropriate acknowledgment."


			<nowiki>{{NCBI disclaimer copyright}}</nowiki>

			Produces the following text and links:

			{{NCBI disclaimer copyright}}

	==External Links==		==External Links==