2009 Group Project 3 - Revision history

Z8600021: /* Timeline and Stages of Embryonic Development */

2018-07-07T01:10:24Z

Timeline and Stages of Embryonic Development

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	==Timeline and Stages of Embryonic Development==		==Timeline and Stages of Embryonic Development==

	Zebrafish ~~images removed pending author approval for reuse.~~		{{Zebrafish stages table}}


	'''Links:''' {{~~Template:~~2009Group3}}		'''Links:''' {{2009Group3}}

	==Genetics of the ZebraFish and Embryology==		==Genetics of the ZebraFish and Embryology==

Z8600021 at 04:48, 5 July 2018

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 ==Timeline and Stages of Embryonic Development==
-{| class="wikitable" style="margin: 1em auto 1em auto"
-|'''Duration'''  || '''Period Name''' || '''Image'''
+Zebrafish images removed pending author approval for reuse.
-|-
 '''Links:''' {{Template:2009Group3}}

Z8600021 at 02:50, 22 Haziran 2012

2012-06-22T02:50:46Z

Z8600021 at 22:07, 26 April 2012

2012-04-26T22:07:16Z

← Older revision		Revision as of 09:07, 27 April 2012
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	<div style="background:#F5FFFA; border: 1px solid #CEF2E0; padding: 1em; margin: auto; width: 95%; float:left;"><div style="margin:0;background-color:#cef2e0;font-family:sans-serif;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding-left:0.4em;padding-top:0.2em;padding-bottom:0.2em;">Notice - Mark Hill</div>This page is an undergraduate science embryology student [[ANAT2341_2009_Students#Group_Projects\|Group Project 2009]].</div>		<div style="background:#F5FFFA; border: 1px solid #CEF2E0; padding: 1em; margin: auto; width: 95%; float:left;"><div style="margin:0;background-color:#cef2e0;font-family:sans-serif;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding-left:0.4em;padding-top:0.2em;padding-bottom:0.2em;">Notice - Mark Hill</div>This page is an undergraduate science embryology student [[ANAT2341_2009_Students#Group_Projects\|Group Project 2009]]. See also [[Zebrafish Development]].</div>
	[[image:Zebrafish_image.jpg‎\|thumb\|450px\|right\|Picture 1: Zebrafish]]		[[image:Zebrafish_image.jpg‎\|thumb\|450px\|right\|Picture 1: Zebrafish]]
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S8600021 at 03:46, 1 September 2010

2010-09-01T03:46:00Z

← Older revision		Revision as of 14:46, 1 September 2010
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			<div style="background:#F5FFFA; border: 1px solid #CEF2E0; padding: 1em; margin: auto; width: 95%; float:left;"><div style="margin:0;background-color:#cef2e0;font-family:sans-serif;font-size:120%;font-weight:bold;border:1px solid #a3bfb1;text-align:left;color:#000;padding-left:0.4em;padding-top:0.2em;padding-bottom:0.2em;">Notice - Mark Hill</div>This page is an undergraduate science embryology student [[ANAT2341_2009_Students#Group_Projects\|Group Project 2009]].</div>
	[[image:Zebrafish_image.jpg‎\|thumb\|450px\|right\|Picture 1: Zebrafish]]		[[image:Zebrafish_image.jpg‎\|thumb\|450px\|right\|Picture 1: Zebrafish]]
	‎		‎

S8600021: /* Timeline and Stages of Embryonic Development */

2010-07-31T22:05:44Z

Timeline and Stages of Embryonic Development

← Older revision		Revision as of 09:05, 1 August 2010
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	\| 72 hrs - 30 Days \|\|'''[[Larval Period]]''' \|\|[[File:Larvae1.png\|The Larval Period. Photo supplied by Judy Cebra-Thomas‎]]		\| 72 hrs - 30 Days \|\|'''[[Larval Period]]''' \|\|[[File:Larvae1.png\|The Larval Period. Photo supplied by Judy Cebra-Thomas‎]]
	\|}		\|}

			'''Links:''' {{Template:2009Group3}}

	==Genetics of the ZebraFish and Embryology==		==Genetics of the ZebraFish and Embryology==

Z3218657: /* Genetics of the ZebraFish and Embryology */

2009-10-15T02:14:30Z

Genetics of the ZebraFish and Embryology

← Older revision		Revision as of 13:14, 15 October 2009
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	The ''Danio rerio'' (zebrafish) genome has not yet been fully sequenced. It is made up of 25 pairs of chromosomes and is approximately half the length of the human genome. As of September 24, 2009, 1,543,637,863 base pairs have been sequenced of an estimated total of 2,011,175,423 bps.		The ''Danio rerio'' (zebrafish) genome has not yet been fully sequenced. It is made up of 25 pairs of chromosomes and is approximately half the length of the human genome. As of September 24, 2009, 1,543,637,863 base pairs have been sequenced of an estimated total of 2,011,175,423 bps.

	~~Current Sequencing Status:~~ http://www.sanger.ac.uk/Projects/D_rerio/		[http://www.sanger.ac.uk/Projects/D_rerio/ Current Sequencing Status]

	=====''Danio rerio'' Genome Sequencing Project=====		=====''Danio rerio'' Genome Sequencing Project=====

Z3218657: /* Danio rerio Genome Sequencing Project */

2009-10-15T02:13:58Z

Danio rerio Genome Sequencing Project

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	Zv8, the 8th integrated Whole Genome Shotgun assembly of the zebrafish was released in June, 2008 by the Wellcome Trust Sanger Institute. This project gives us a genome length of 1,481,241,295 bps and the accompanying gene sets is comprised of 24,147 genes which code proteins.		Zv8, the 8th integrated Whole Genome Shotgun assembly of the zebrafish was released in June, 2008 by the Wellcome Trust Sanger Institute. This project gives us a genome length of 1,481,241,295 bps and the accompanying gene sets is comprised of 24,147 genes which code proteins.

	For more information on the Zv8, ~~visit~~ http://www.sanger.ac.uk/Projects/D_rerio/wgs.shtml.		For more information on the Zv8, follow the link to [http://www.sanger.ac.uk/Projects/D_rerio/wgs.shtml The Sanger Trust institute Website]

	=====''Danio rerio'' Mitochondrial DNA Sequence=====		=====''Danio rerio'' Mitochondrial DNA Sequence=====

Z3218657: /* Genetic Mutations Associated with Sight */

2009-10-15T02:11:24Z

Genetic Mutations Associated with Sight

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	===Genetic Mutations Associated with Sight===		===Genetic Mutations Associated with Sight===
	Nephronophthisis (NPHP) is a cystic kidney disease, caused by mutations of nine genes and is also associated to cerebellar defects, situs inversus and retinitis pigmentosa where the mutation of NPHP5 and NPHP6 is associated to progressive blindness. The Renal Division of the University Hospital in Freiburg, Germany determined that gene products, such as nephrocystin5 and nephrocystin6, contributed to maintaining photoreceptor homeostasis. Zebrafish embryos were utilized to analyze the genetic interaction of the gene products once NPHP5 and NPHP6 was depleted.		Nephronophthisis (NPHP) is a cystic kidney disease, caused by mutations of nine genes and is also associated to cerebellar defects, situs inversus and retinitis pigmentosa where the mutation of NPHP5 and NPHP6 is associated to progressive blindness. The Renal Division of the University Hospital in Freiburg, Germany determined that gene products, such as nephrocystin5 and nephrocystin6, contributed to maintaining photoreceptor homeostasis. Zebrafish embryos were utilized to analyze the genetic interaction of the gene products once NPHP5 and NPHP6 was depleted.
	The following link provides further information about the usefulness of the zebrafish as a model for ~~eye disorder research~~ http://www.youtube.com/watch?v=ZItgyfuxsfM		The following link provides further information about the usefulness of the zebrafish as a model for [http://www.youtube.com/watch?v=ZItgyfuxsfM eye disorder research]

	===Significance of Notochord===		===Significance of Notochord===

Z3223194 at 01:55, 15 October 2009

2009-10-15T01:55:41Z

← Older revision		Revision as of 12:55, 15 October 2009
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	Streisinger was not the only scientist working on the embryologic development of the zebrafish. Neurologist Charles Kimmel (also at Oregon) used the zebrafish to model the development of the nervous system and vertebrae ~~and by~~ the mid- 1970s, Kimmel uncovered the segmental structure of its brain.		Streisinger was not the only scientist working on the embryologic development of the zebrafish. Neurologist Charles Kimmel (also at Oregon) used the zebrafish to model the development of the nervous system and vertebrae. By the mid- 1970s, Kimmel uncovered the segmental structure of its brain.

	===Hesitations===		===Hesitations===

← Older revision		Revision as of 13:50, 22 Haziran 2012
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	Boore J (1999) [http://nar.oxfordjournals.org/cgi/content/abstract/27/8/1767 Animal mitochondrial genomes] Nucleic Acids Research, 27:1767-1780.		Boore J (1999) [http://nar.oxfordjournals.org/cgi/content/abstract/27/8/1767 Animal mitochondrial genomes] Nucleic Acids Research, 27:1767-1780.

	Bradbury J (2004) [http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0020148 Small Fish, Big Science], PLoS Biology 2(5):148-149. PMID: 15138510		Bradbury J (2004) [http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.0020148 Small Fish, Big Science], PLoS Biology 2(5):148-149. PMID 15138510

	Broughton R, Milam J & Roe B (2001) [http://genome.cshlp.org/cgi/content/abstract/11/11/1958 The Complete Sequence of the Zebrafish (Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertebrate Mitochondrial DNA] Genome Research, 11:1958-1967. PMID: 11691861		Broughton R, Milam J & Roe B (2001) [http://genome.cshlp.org/cgi/content/abstract/11/11/1958 The Complete Sequence of the Zebrafish (Danio rerio) Mitochondrial Genome and Evolutionary Patterns in Vertebrate Mitochondrial DNA] Genome Research, 11:1958-1967. PMID 11691861

	Crown, Elizabeth (2005) [http://news.bio-medicine.org/biology-news-3/Tiny-zebrafish-teaches-researchers-how-to-fight-off-a-deadly-cancer-11249-1/ Tiny Zebrafish teaches Researchers how to Fight off a Deadly Cancer] Bio-Medicine, Northwestern University.		Crown, Elizabeth (2005) [http://news.bio-medicine.org/biology-news-3/Tiny-zebrafish-teaches-researchers-how-to-fight-off-a-deadly-cancer-11249-1/ Tiny Zebrafish teaches Researchers how to Fight off a Deadly Cancer] Bio-Medicine, Northwestern University.

	Glickman N & Yelon D (2002) [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=PubMed&Cmd=ShowDetailView&TermToSearch=12468254&ordinalpos=17&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Cardiac development in zebrafish:coordination of form and function] Cell and Developmental Biology, 13:507-513. PMID: 12468254		Glickman N & Yelon D (2002) [http://www.ncbi.nlm.nih.gov/sites/entrez?Db=PubMed&Cmd=ShowDetailView&TermToSearch=12468254&ordinalpos=17&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Cardiac development in zebrafish:coordination of form and function] Cell and Developmental Biology, 13:507-513. PMID 12468254

	Green D & Reed J (1998) [https://www.sciencemag.org/cgi/content/abstract/281/5381/1309 Mitochondria and Apoptosis] Science, 281:1309-1312.		Green D & Reed J (1998) [https://www.sciencemag.org/cgi/content/abstract/281/5381/1309 Mitochondria and Apoptosis] Science, 281:1309-1312.

	Grunwald DJ, Eisen JS (2002) Timeline: Headwaters of the Zebrafish emergence of a new water vertebrae, Nature Reviews Genetics, 3:717-724. PMID: 12209146		Grunwald DJ, Eisen JS (2002) Timeline: Headwaters of the Zebrafish emergence of a new water vertebrae, Nature Reviews Genetics, 3:717-724. PMID 12209146

	Hartnett L, Glynn C, Nolan CM, Grealy M and Byrnes L. (2009) [http://www.ncbi.nlm.nih.gov/pubmed/19757379 Insulin-like Growth factor-2 Regulates early Neural and Cardiovascular system development in Zebrafish embryos] Department of Biochemistry, National University of Ireland, Ireland. [PMID: 19757379]		Hartnett L, Glynn C, Nolan CM, Grealy M and Byrnes L. (2009) [http://www.ncbi.nlm.nih.gov/pubmed/19757379 Insulin-like Growth factor-2 Regulates early Neural and Cardiovascular system development in Zebrafish embryos] Department of Biochemistry, National University of Ireland, Ireland. PMID 19757379

	Heidelberg (2008) [http://www.embl.de/aboutus/communication_outreach/media_relations/2008/081009_heidelberg/index.html Digital zebrafish embryo provides the first complete developmental blueprint of a vertebrate] European Molecular Biology Laboratory		Heidelberg (2008) [http://www.embl.de/aboutus/communication_outreach/media_relations/2008/081009_heidelberg/index.html Digital zebrafish embryo provides the first complete developmental blueprint of a vertebrate] European Molecular Biology Laboratory
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	Kendrick C, Zhang L, Jülich D and Holley AS [http://dev.biologists.org/cgi/content/abstract/135/12/2065 Cell cycle progression is required for zebrafish somite morphogenesis but not segmentation clock function] Department of Molecular, Cellular and Developmental Biology, Yale University, USA.		Kendrick C, Zhang L, Jülich D and Holley AS [http://dev.biologists.org/cgi/content/abstract/135/12/2065 Cell cycle progression is required for zebrafish somite morphogenesis but not segmentation clock function] Department of Molecular, Cellular and Developmental Biology, Yale University, USA.

	Kimmel CB, Ballard WW, Kimmel SR, Ullmann B, Schilling TF (1995)[http://www.ncbi.nlm.nih.gov/pubmed/8589427?dopt=Abstract Stages of Embryonic Development of the Zebrafish] Institute of Neuroscience, University of Oregon, Eugene USA. [PMID: 8589427]		Kimmel CB, Ballard WW, Kimmel SR, Ullmann B, Schilling TF (1995)[http://www.ncbi.nlm.nih.gov/pubmed/8589427?dopt=Abstract Stages of Embryonic Development of the Zebrafish] Institute of Neuroscience, University of Oregon, Eugene USA. PMID 8589427

	Postlethwait JH (2006) [http://content.karger.com/ProdukteDB/produkte.asp?Aktion=ShowAbstractBuch&ProduktNr=232003&ArtikelNr=95104 The Zebrafish Genome: A review and msx Gene Case Study. In J. N. Volff] Vertebrate Genomes, 2:183-197		Postlethwait JH (2006) [http://content.karger.com/ProdukteDB/produkte.asp?Aktion=ShowAbstractBuch&ProduktNr=232003&ArtikelNr=95104 The Zebrafish Genome: A review and msx Gene Case Study. In J. N. Volff] Vertebrate Genomes, 2:183-197

	Schafer T, Putz M, Lienkamp S, Ganner A, Bergbreiter A, Ramachandran H, Gieloff V, Gerner M, Mattonet C, Czarnecki PG, Sayer JA, Otto EA, Hildebrandt F, Kramer-Zucker A and Walz G (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18723859 Genetic & Physical Interaction between NPHP5 and NPHP6 gene products] Renal Division, University Hospital Freiburg, Germany, 17(23):3655-62. [PMID: 18723859]		Schafer T, Putz M, Lienkamp S, Ganner A, Bergbreiter A, Ramachandran H, Gieloff V, Gerner M, Mattonet C, Czarnecki PG, Sayer JA, Otto EA, Hildebrandt F, Kramer-Zucker A and Walz G (2008) [http://www.ncbi.nlm.nih.gov/pubmed/18723859 Genetic & Physical Interaction between NPHP5 and NPHP6 gene products] Renal Division, University Hospital Freiburg, Germany, 17(23):3655-62. PMID 18723859

	Stainier D (2001) [http://www.find-health-articles.com/rec_pub_11253067-zebrafish-genetics-vertebrate-heart-formation.htm Zebrafish Genetics and Vertebrate Heart Formation] Nature Reviews, 2:39-48.		Stainier D (2001) [http://www.find-health-articles.com/rec_pub_11253067-zebrafish-genetics-vertebrate-heart-formation.htm Zebrafish Genetics and Vertebrate Heart Formation] Nature Reviews, 2:39-48.

	Sun C, Xu M, Xing Z, Wu Z, Li Y, Li T and Zhao M (2009) [http://www.ncbi.nlm.nih.gov/sites/entrez Expression and Function on Embryonic Development of Lissencephaly-1 genes in Zebrafish] State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Science, Shanghai, China, 41(8):677-88. [PMID-19657569]		Sun C, Xu M, Xing Z, Wu Z, Li Y, Li T and Zhao M (2009) [http://www.ncbi.nlm.nih.gov/sites/entrez Expression and Function on Embryonic Development of Lissencephaly-1 genes in Zebrafish] State Key Laboratory of Molecular Biology, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Science, Shanghai, China, 41(8):677-88. PMID 19657569

	Zhou Y, Xu Y, Liu Y, Zhang Z and Deng F. (2009) [http://www.ncbi.nlm.nih.gov/sites/entrez Znrg, a novel gene expressed mainly in the developing Notochord of Zebrafish] The Laboratory of Molecular Genetics and Development Biology, College of Life Science, Wuhan University, China, 41(8):677-88. [PMID-19693699]		Zhou Y, Xu Y, Liu Y, Zhang Z and Deng F. (2009) [http://www.ncbi.nlm.nih.gov/sites/entrez Znrg, a novel gene expressed mainly in the developing Notochord of Zebrafish] The Laboratory of Molecular Genetics and Development Biology, College of Life Science, Wuhan University, China, 41(8):677-88. PMID 19693699