UNSW Embryology
Head and Neck Development
© Dr Mark Hill (2008)
Introduction
The head and neck structures are derived from pharyngeal arches 1 and 2.

Each arch contains similar components derived from endoderm, mesoderm, neural
crest and ectoderm. These components though will form different structures dependent upon which arch they are within.

The cavity within the pharyngeal arches forms the pharynx.

The pharynx contributes to 2 endocrine organs, in the roof the pituitary
(hypophysis) and the floor the
thyroid. The thyroid gland being
one of the first endocrine organs to be
formed has an important role in embryonic
development. The pharynx floor of all
arches also contribute to the formation of
the tongue.


Because the head contains many
different structures also review notes on
Special Senses (eye,
ear, nose), Respiratation (pharynx),
Integumentary (Teeth),
Endocrine (thyroid,
pituitary).
Some Recent Findings
Schlosser G.
Evolutionary origins of vertebrate placodes: insights from developmental studies and from comparisons with other deuterostomes.
J Exp Zoolog B Mol Dev Evol. 2005 Jul 15;304(4):347-99.
Melnick M, Witcher D, Bringas P Jr, Carlsson P, Jaskoll T.
Meckel's cartilage differentiation is dependent on hedgehog signaling.
Cells Tissues Organs. 2005;179(4):146-57.
Matsuoka T, Ahlberg PE, Kessaris N, Iannarelli P, Dennehy U, Richardson WD, McMahon AP, Koentges G.
Neural crest origins of the neck and shoulder.
Nature. 2005 Jul 21;436(7049):347-55.
Richman JM, Lee SH.
About face: signals and genes controlling jaw patterning and identity in vertebrates.
Bioessays. 2003 Jun;25(6):554-68. Review.
Wilkie AO, Morriss-Kay GM.
Genetics of craniofacial development and malformation.
Nat Rev Genet. 2001 Jun;2(6):458-68.
Reading
- Human Embryology (3rd ed), WJ. Larsen Chapter 12 Development of the Head, the Neck, the Eyes, and the Ears pp349 - 418.
- The Developing Human: Clinically Oriented Embryology (7th ed) Moore & Persaud Chapter Chapter 10 The Pharyngeal Apparatus pp201 - 240.
- Before we Are Born (5th ed.) Moore and Persaud Ch
- Essentials of Human Embryology Larson Ch
- Human Embryology Fitzgerald and Fitzgerald Ch
- UNSW Embryology Face Development | Selected Head and Neck References
- Additional References- Selected
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Objectives

- List the main structures derived from the pharyngeal arches, pouches and clefts.
- Briefly summarise the development of teeth (primary and permanent)
- Briefly summarise the development of the tongue.
- Know the stages and structures involved in the development of the face.
- Predict the results of abnormal development of the face and palate.
Learning activities
- Review the development of endodermal derivatives of the pharynx.
- Review the development of the face and palate.
- Review development of pituitary and thyroid.
- Discuss cleft lip and palate and Pierre Robin Syndrome giving special reference to the development aberrations causing malformations and their consequences.
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Pharyngeal Arch Components
Structures derived from Arches, Pouches, Grooves, Membranes
Major features to identify for each: arch, pouch, groove and membrane.
Contribute to the formation of head and neck and in the human appear at the 4th week.
The first arch contributes the majority of upper and lower jaw structures.
Structures derived from Arches
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ARCH
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Nerve
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Muscles
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Skeletal
Structures
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Ligaments
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1 (maxillary/mandibular)
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trigeminal (V)
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malleus, incus
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ant lig of malleus, sphenomandibular
ligament
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2
(hyoid)
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facial (VII)
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stapes, styloid process, lesser cornu
of hyoid, upper part of body of hyoid
bone
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stylohyoid ligament
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3
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glossopharyngeal (IX)
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greater cornu of hyoid, lower part of
body of hyoid bone
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4 & 6
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superior laryngeal and recurrent
laryngeal branch of vagus (X)
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thyroid, cricoid, arytenoid,
corniculate and cuneform cartilages
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Structures
derived from Pouches
Each pouch is lined with
endoderm and generates specific
structures.
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POUCH
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Overall
Structure
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Specific
Structures
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1
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tubotympanic recess
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tympanic membrane, tympanic cavity,
mastoid antrum, auditory tube
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2
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intratonsillar cleft
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crypts of palatine tonsil, lymphatic
nodules of palatine tonsil
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3
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inferior parathyroid gland, thymus
gland
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4
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superior parathyroid gland,
ultimobranchial body
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5
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becomes part of 4th pouch
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Structures
derived from Grooves
Only the first
groove differentiates into an adult
structure and forms part of the external acoustic
meatus.
Structures
derived from Membranes
At the bottom of each
groove lies the membrane which is formed from the
contact region of ectodermal groove and endodermal
pouch. Only the first membrane
differentiates into an adult structure and forms
the tympanic membrane.
Development Overview
Early Pharynx and Face Development | Head and Skull | Pharyngeal Arches |
Abnormalities | Molecular Mechanisms
Pharynx and Face
- Early Face and Pharynx
- Pharynx
- buccopharyngeal membrane
- oral membrane
- apposition of ectoderm with endoderm
- no mesoderm beween
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Head/Skull
- chondrocranium forms base of skull
- in lower vertebrates encases brain
- cranial vault
- calveria
- facial skeleton
- pharyngeal arches
- Sensory Placodes
- Head Growth
- continues postnatally
- fontanelle allow head distortion on birth
and early growth
- bone plates remain unfused to allow
growth
- puberty growth of face
- Skull Overview
- Chondrocranium
- formed from paraxial mesoderm
- cranial end of vertebral column
- modified vertebral elements
- occipital and cervical sclerotome
- bone preformed in cartilage
- endochondrial ossification
- Cranial Vault and Facial Skeleton
- muscle
- paraxial mesoderm
- somitomeres and occipital somites
- Calveria
- bone has no cartilage
- direct ossification of mesenchyme
- bones do not fuse
- fibrous sutures
- allow distortion to pass through birth
canal
- allow growth of the brain
- 6 fontanelles
- posterior closes at 3 months
- anterior closes at 18 months
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Face
- derived from pharyngeal or branchial
arches
- Humans have 5 arches
- 1, 2, 3, 4, 6
- Arch 5 does not form or regresses
- from in rostro-caudal sequence
- week 4 onwards
- arch 1 and 2 appear at time of closure of
cranial neuropore
each arch
- has initially similar components
- but forms different structures
Face mainly arch 1 and 2
Neck components arch 3 and 4
arch 4 and 6 fuse
Pharynx and Face
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Pharyngeal Arch Development
- branchial arch (Gk. branchia= gill)
- arch consists of all 3 trilaminar embryo
layers
- ectoderm- outside
- mesoderm- core of mesenchyme
- endoderm- inside
- Neural Crest
- Mesenchyme invaded by neural crest
generating connective tissue components
- cartilage, bone, ligaments
- arises from midbrain and hindbrain
region
- Arch Features
- Each arch contains
- artery
- cartilage
- nerve
- muscular component
- Arches and Phanynx Form
- face, tongue, lips, jaws, palate,
pharynx and neck
- cranial nerves, sense organ
components, glands
- Arch Features
- arch
- groove
- externally separates each arch
- only first pair persist as external
auditory meatus
- pouch
- internally separates each arch
- pockets from the pharynx
- membrane
- ectoderm and endoderm contact
regions
- only first pair persist as tympanic
membrane
- Pharyngeal Arch 1
- Mandibular Arch
- has 2 prominances
- smaller upper- maxillary
- forms maxilla, zygomatic bone and
squamous part of temporal
- larger lower- mandibular
- Pharyngeal Arch 2
- Hyoid Arch
- forms most of hyoid bone
- Arch 3 and 4
- Arch Arteries
- placental vein -> liver -> heart
-> truncus arteriosus
- truncus arteriosus -> aortic sac ->
each arch artery
- arch artery -> dorsal aorta ->
- Arch Arteries
- Arch 1
- mainly lost, form part of maxillary
artery
- Arch 2
- Arch 3
- common carotid arteries
- internal carotid arteries
- Arch 4
- left forms part of aortic arch
- right forms part right subclavian
artery
- Arch 6
- left- part of left pulmonary
artery
- right- part of right pulmonary
artery
- Arch Cartilage
- Arch 1- Meckel's cartilage
- dorsal ends form malleus and
incus
- midpart forms ligaments
- ant. malleus, sphenomandibular
- ventral part forms mandible
template
- horseshoe shaped
- Arch 2- Reichert's cartilage
- dorsal ends form stapes and Temporal
bone styloid process
- ventral part ossifies to form hyoid
bone components
- lesser cornu and superior body
- Arch 3- forms greater cornu and inferior
part of hyoid
- Arch 4&6- form laryngeal cartilages
- except epiglottis (from hypobranchial
eminence)
- Arch Muscle
- Arch 1
- muscles of mastication, mylohyoid,
tensor tympanic, ant. belly digastric
- Arch 2
- muscles of facial expression,
stapedius, stylohyoid, post. belly
digastric
- Arch 3
- Arch 4&6
- crycothyroid, pharynx constrictors,
larynx muscles, oesophagus (st.
muscle)
- Arch Nerve
- Arch 1
- CN V trigeminal
- caudal 2/3 maxillary and
mandibular
- cranial 1/3 sensory nerve of heaad and
neck, mastication motor
- Arch 2
- Arch 3
- Arch 4&6
- CN X vagus
- arch 4- superior laryngeal
- arch 6- recurrent laryngeal
- Arch Pouches
- Arch 1
- elongates to form tubotympanic
recess
- tympanic cavity, mastoid antrum,
eustachian tube
- Arch 2
- forms tonsillar sinus
- mostly oblierated by palatine
tonsil
- Arch 3
- forms inferior parathyroid and
thymus
- Arch 4
- forms superior parathyroid,
parafollicular cells of Thyroid
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Thyroid Gland
- Thyroid Gland
- not a pouch structure
- first endocrine organ to develop day
24
- from floor of pharynx
- descends thyroglossal duct (which
closes)
- upper end at foramen cecum
Face Development
- begins week 4 centered around
stomodeum
- external depression at oral membrane
- 5 initial primordia from neural crest
mesenchyme
- single frontonasal prominence
(FNP)
- forms forehead, nose dorsum and
apex
- nasal placodes develop later
bilaterally
- pushed medially
- paired maxillary prominences
- form upper cheek and upper lip
- paired mandibular prominences
- lower cheek, chin and lower lip
Ear Auricles
- form from 6 hillocks (week 5)
- 3 on each of arch 1 and 2
Facial Prominences
Tongue Development
- Contributions from all arches
- which changes with time
- begins as swelling rostral to foramen
cecum
- median tongue bud
Arch 1
- oral part of tongue (ant 3/2)
Arch 2
- initial contribution to surface is
lost
Arch 3
- pharyngeal part of tongue (post 1/3)
Arch 4
- epiglottis and adjacent regions
Salivary Glands
- epithelial buds in oral cavity (wk 6-7)
extend into mesenchyme
- parotid, submandibular, sublingual
Sensory placodes
Sensory placodes
Abnormalities
- First Arch Syndrome
- 2 major types, both result in extensive
facial abnormalites
- Treacher Collins Syndrome
- Pierre Robin Syndrome
- DiGeorge Syndrome
- absence of thymus and parathyroid
glands
- 3rd and 4th pouch do not form
- disturbance of cervical neural crest
migration
- Cysts
- Cleft Lip and Palate
- 300+ different abnormalities
- different cleft forms and extent
- upper lip and ant. maxilla
- hard and soft palate
- Facial Clefts
- Holoprosencephaly
- Maternal Effects
- Retinoic Acid
- present in skin ointments
- 1988 associated with facial
developmental abnormalities
- Abnormalities 4- Maternal Effects
- Fetal Alcohol Syndrome
- due to alcohol in early development
(week 3+)
- facial and neurological
abnormalities
- lowered ears, small face, mild+
retardation
- Microcephaly - leads to small head
circumference
- Short Palpebral fissure - opening
of eye
- Epicanthal folds - fold of skin at
inside of corner of eye
- Flat midface
- Low nasal bridge
- Indistinct Philtrum - vertical
grooves between nose and mouth
- Thin upper lip
- Micrognathia - small jaw
- exposure of embryos in vitro to
ethanol simulates premature
differentiation of prechondrogenic
mesenchyme of the facial primordia
(1999)
Molecular Mechanisms
- Recent experiments with human embryos have
shown that gene expression in the head region
follows that seen in other species embryo
models
- Branchial HOX Gene Expression and Human
Craniofacial Development
- Vieille-Grosjean etal. Dev Biol.
1997
- hindbrain segmentation into rhombomeres
- Hox expression regulates segmentation
- retinoic acid may regulate Hox
expression
- Neural Crest migrates into arches from
specific rhombomere levels
- Dlx Expression
- dlx are homeobox genes
- family of dlx-1 to dlx-7
- regulates Anterior-Posterior
identity
- dlx-1 and -2 regulate arch 1
- paraxial mesoderm unsegmented somitomeres
(7)
- follows neural crest migration pathways
- somitomere 3 mesodermal cells (blue) in Arch
1
- SHH
- expressed in arches
- regulates midface formation
- Pax-3 expressed in placode cells
- contribute to the CNV
- ophthalmic branch
Development Terms
- anlage- (Ger. )
primordium, structure or cells which will form a
future structure.
- brain- general term for the central
nervous system formed from 3 primary
vesicles.
- buccopharyngeal
membrane- (=oral membrane) at cranial
(mouth) end of gastrointestinal tract (GIT)
where surface ectoderm and GIT endoderm meet.
(see also cloacal
membrane)
- cloacal
membrane- at caudal (anal) end of
gastrointestinal tract (GIT) where surface
ectoderm and GIT endoderm meet forms the
openings for GIT, urinary, reproductive tracts.
(see also buccopharyngeal
membrane)
- connective tissue-
- dermomyotome- dorsolateral half of each
somite that forms the dermis and muscle.
- dorsal root ganglia-
(=spinal ganglia) sensory ganglia derived from
the neural crest lying laterally paired and
dorsally to the spinal cord (in the embryo found
ventral to the spinal cord). Connects centrally
with the dorsal horn of the spinal cord.
- dura mater-
- ectoderm- the
layer (of the 3 germ cell layers) which form the
nervous system from the neural tube and neural
crest and also generates the epithelia covering
the embryo.
- endoderm- the
layer (of the 3 germ cell layers) which form the
epithelial lining of the gastrointestinal tract
(GIT) and accessory organs of GIT in the
embryo.
- epiblast- the
layer (of the bilaminar embryo) that generates
endoderm and mesoderm by migration of cells
through the primitive streak. The remaing cells
form ectoderm.
- growth
factor- usually a protein or peptide that
will bind a cell membrane receptor and then
activates an intracellular signaling pathway.
The function of the pathway will be to alter the
cell directly or indirectly by changing gene
expression. (eg shh)
- hox-
(=homeobox) family of
transcription factors that bind DNA and activate
gene expression. Expression of different Hox
genes along neural tube defines rostral-caudal
axis and segmental levels.
- mesoderm- the
middle layer of the 3 germ cell layers of the
embryo. Mesoderm outside the embryo and covering
the amnion, yolk and chorion sacs is
extraembryonic mesoderm.
- muscle- 3 main
types of muscle (smooth, cardiac and skeletal)
all derived from mesoderm but different
regions.
- myotome-
- myoblast-
- neural
crest- cell region at edge of neural plate,
then atop the neural folds, that remains outside
and initially dorsal to the neural tube when it
forms. These paired dorsal lateral streaks of
cells migrate throughout the embryo and can
differentiate into many different cell
types(=pluripotential). Those that remain on the
dorsal neural tube form the sensory spinal
ganglia (DRG). Neural crest cells migrate into
the somites.
- neural
tube- neural plate region of ectoderm
pinched off to form hollow ectodermal tube above
notochord in mesoderm.
- neuropore-
opening at either end of neural tube:
cranial=rostral=anterior, caudal=posterior. The
cranial neuropore closes (day 25) approx. 2 days
(human) before caudal.
- notochord- rod
of cells lying in mesoderm layer ventral to the
neural tube, induces neural tube and secretes
sonic hedgehog which "ventralizes" the neural
tube and may influence somite development.
- otocyst- (=otic
vesicle) sensory placode
which sinks into mesoderm to form spherical
vesicle (stage 13/14 embryo) that will form
components of the inner ear.
- pharyngeal arches- (=branchial
arches, Gk. gill) form structures of the head.
Six arches form but only 4 form any structures.
Each arch has a pouch, membrane and cleft.
- pharynx-
uppermost end of GIT, beginning at the
buccopharyngeal membrane and at the level of the
pharyngeal arches.
- segmentation-
- spinal
cord- caudal end of neural tube that does
not contribute to brain. Note: the process of
secondary neuralation contributes the caudal end
of the spinal cord.
- sonic hedgehog-
(=shh) secreted growth factor that binds patched
(ptc) receptor on cell membrane. SHH function is
different for different tissues in the embryo.
In the nervous system, it is secreted by the
notochord, ventralizes the neural tube, inducing
the floor plate and motor neurons.
- transcription
factor- a factor (protein or protein with
steroid) that binds to DNA to alter gene
expression, usually to activate. (eg steroid
hormone+receptor, Retinoic acid+Receptor, Hox,
Pax, Lim, Nkx-2.2)
Glossary of Terms
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Comments

The head and neck are one of the most complicated structures that the embryo forms, with special intermediate structures (the pharyngeal arches)
and contributions from all 3 embryonic layers (ectoderm, mesoderm, endoderm), and significantly, a major contribution from the neural crest.
See also specific notes on Face Development
This section of notes will not deal in detail with brain development (which is covered in neural development notes) but more about the
"shell" in which the brain resides.
Please email Dr Mark Hill if you wish to make a comment about this current project.