Amos' WWW links page

Protein 3D structure and associated topics databases
PDB - Protein Data Bank [Mirrors in EBI | Australia | Israel] BioMagResBank - Repository for data on proteins, peptides, and nucleic acids from NMR spectroscopy SWISS-MODEL Repository - Automatically generated protein models db ModBase - Db of comparative protein structure models CATH - UCL BSM structural classification of proteins SCOP - Structural classification of proteins [Mirror at USA | Israel | Singapore | Australia] Mol_R_Us - Molecules R Us, browser for PDB BMM Domain Server - Biomolecular Modelling Laboratory (ICRF) protein domain server PRESAGE - Collaborative resource for structural genomics ReLiBase - Receptor/ligand complexes db [Mirror in USA] TOPS - Protein topology atlas CCDC - Cambridge Crystallographic Data Center (Cambridge Stuctural Db (CSD))   HSSP - Homology-derived secondary structure of proteins db SWISS-3DIMAGE - 3D images of proteins and other biological macromolecules BioImage - Biological image db (contains imaging data on macromolecules)
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Protein 2D-PAGE and MS databases
WORLD-2DPAGE - A complete index of 2D-PAGE db and servers Phoretix links - Phoretix page of links to 2D gel db
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Nucleotide and associated topics databases
EMBL - EMBL Nucleotide sequence db (EBI) Genbank - GenBank Nucleotide Sequence db (NCBI) DDBJ - DNA Data Bank of Japan GSDB - Genome Sequence db dbEST - dbEST (Expressed Sequence Tags) db (NCBI) dbSTS - dbSTS (Sequence Tagged Sites) db (NCBI)   NDB - Nucleic Acid Databank (3D structures) [Mirror at EBI] BNASDB - Nucleic acid structure db from University of Pune   AsDb - Aberrant Splicing db ACUTS - Ancient conserved untranslated DNA sequences db Codon Usage Db EPD - Eukaryotic Promoter db HOVERGEN - Homologous Vertebrate Genes db IMGT - ImMunoGeneTics db [Mirror at EBI] ISIS - Intron Sequence and Information System RDP - Ribosomal db Project gRNAs db - Guide RNA db PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db sRNA db - Small RNA db ssu rRNA - Small ribosomal subunit db lsu rRNA - Large ribosomal subunit db 5S rRNA - 5S ribosomal RNA db tmRNA Website tmRDB - tmRNA dB tRNA - tRNA compilation from the University of Bayreuth uRNADB - uRNA db RNA editing - RNA editing site RNAmod db - RNA modification db dbSNP - Single Nucleotide Polymorphisms db SOS-DGBD - Db of Drosophila DNA sequences annotated with regulatory binding sites TelDB - Multimedia Telomere Resource TRADAT - TRAnscription Databases and Analysis Tools Subviral RNA db - Small circular RNAs db (viroid and viroid-like)   MPDB - Molecular probe db OPD - Oligonucleotide probe db VectorDB - Vector sequence db
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Carbohydrates resources
CarbBank - Complex Carbohydrate Structure Database TGN - The Glycoscience Network CARBHYD - Carbohydrate information WWW sites Monosacharide browser - Space filling Fischer projection for monosaccharides
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Species specific databases
Human
OMIM - Online Mendelian Inheritance in Man GENATLAS - Human genes atlas GeneClinics - Medical genetics knowledge base GDB - Genome Data Base GeneCards - Db integrating information on human genes TIGR HGI - TIGR Human Gene Index Hs UniGene - Human transcripts in GenBank (EST clusters) STACK - Sequence Tag Alignment and Consensus Knowledgebase (Db of consensus human ESTs) GenLink - Human genetics resource GENOTK - Human cDNA db CGAP - Cancer Genome Anatomy Program HMGD - Human Gene Mutation db dbSNP - Human single nucleotide polymorphism (SNP) db HGBASE - Human Genic Bi-allelic Sequences Db UDB - Unified db for Human genome mapping Chr1 - Human chromosome 1 at Rockefeller University [Mirror at EBI] Chr3 - Human chromosome 3 db at the University of Texas Health Science Center Chr7 - Human chromosome 7 db at Ontario's Hospital for Sick Children Chr8 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 8 Chr9 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 9 Chr9 - Human chromosome 9 db Chr10 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 10 GTC Chr10 data - Human chromosome 10 data from Genome Therapeutics Corporation Chr11 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 11 11DB - Human chromosome 11 db at Imperial College (U.K.) Chr12 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 12 Chr13 - Human chromosome 13 db at Columbia Chr14 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 14 Chr15 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 15 Chr15 UBC - Human chromosome 15 WWW page at UBC Chr16 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 16 Chr16 LANL - Human chromosome 16 db at Los Alamos National Laboratory Chr16 TIGR - Human chromosome 16 db at TIGR Chr17 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 17 Chr18 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 18 Chr18 - Human chromosome 18 at Boston Children's Hospital Chr19 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 19 Chr20 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 20 Chr21 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 21 Chr21 at Tokyo Univ. - Human chromosome 21 Sequence Map from the University of Tokyo Chr21 at ERI - Human chromosome 21 genomic sequence db from the Eleanor Roosevelt Institute Chr22 SWISS-PROT list - Links to SWISS-PROT entries from human chromosome 22 Chr 22 at Sanger - Sanger Center chromosome 22 project Chr22 at HGC - Human genome center for chromosome 22 ChrX SWISS-PROT list - Links to SWISS-PROT entries from human chromosome X IXDB - Integrated X chromosome db ChrY SWISS-PROT list - Links to SWISS-PROT entries from human chromosome Y
Vertebrates
OMIA - Online Mendelian Inheritance in Animals MGI - Mouse Genome Informatics (includes MGD) [Mirrors in Australia | Israel | UK | Japan] TIGR MGI - TIGR Mouse Gene Index Mm UniGene - Mouse transcripts in GenBank (EST clusters) RatMAP - Rat genome db TIGR RGI - TIGR Rat Gene Index Rn Unigene - Rat transcripts in GenBank (EST clusters)   BovBASE - Bovine genome db (in UK) BOVMAP - Bovine genome db (in France) Ark-Cat - Cat genome db HorseBASE - Horse genome db DGP - Dog Genome Project PiGBASE - Pig genome db SheepBASE - Sheep genome db (also known as SheepMap) [Mirror in UK] MIS - Mendelian Inheritance in Sheep   ChickGBASE - Chicken genome db   Fugu - HGMP Resource Centre Fugu Project (Fugu rubripes) Medakafish - Mekada fish (Oryzias latipes) server Ark-Tilapia - Tilapia mossambica genome db The fish net - Zebrafish server FishBase - Global information system on fishes
Mitochondrion and chloroplast
GOBASE - Organelle Genome Database MitoDat - Mendelian Inheritance and the Mitochondrion db (mitochondrial nuclear genes) MITOMAP - Human mitochondrial genome db MmtDB - Metazoa mitochondrial DNA variants db MitBASE - Integrated mitochondrial DNA db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis HvrBase - Primates mtDNA control region sequences compilation
Insects
Drosophila SWISS-PROT list - Links to Drosophila SWISS-PROT entries FlyBase - Drosophila genetic and molecular db [Mirror at EBI] FlyView - Drosophila image db GIFTS - Gene Interactions in the Fly Trans-World Server FlyNets - Db of molecular interactions in Drosophila melanogaster SOS-DGBD - Db of Drosophila DNA sequences annotated with regulatory binding sites Mosquito Genomics
Invertebrates
WormBase - C.elegans db C.elegans WWW server - at University of Texas Southwestern ACeDb - Caenorhabditis elegans db C.elegans Mitochondrial Directory - Data on C.elegans genes for mitochondrial proteins C.elegans EST - C.elegans EST db from Japan (Yuji Kohara's group) C.elegans SWISS-PROT list - Links to C.elegans SWISS-PROT entries WormPep - C.elegans proteins db WormPD - C.elegans protein db DictyDb - Dictyostelium discoideum db Dicty_cDB - Dictyostelium discoideum cDNA project Dictyostelium discoideum genome project Cone shells Web site LGN - Leishmania Genome Network MAD - Malaria Antigen db Malaria - WHO - Malaria db (from WHO) P.falciparum Sanger - P.falciparum genome project at Sanger P.falciparum - Plasmodium falciparum Gene Sequence Tag project Trypanosoma brucei genome project kDNA - Kinetoplast Minicircle Sequence db
Plants
NAL - AGIS - Access to many plant genome databases at the National Agricultural Library Demeter's genomes - Access to many plant genome databases at the USDA-ARS Mendel - Plant gene nomenclature database from CPGN   TAIR - The Arabidopsis Information Resource TIGR AtGI - TIGR Arabidopsis thaliana Gene Index BeanGenes - Beans genome db BeanRef - Beans genome db and other resources ChlamyDB - Chlamydomonas reinhardtii genome db CottonDB - Cotton genome db MaizeDb - Maize genome db INRA Maize - INRA Maize genome db Piusm sativum (pea) web site RGP - Rice Genome Research Program TIGR GmGI - TIGR Soybean Gene Index TIGR OsGI - TIGR Rice Gene Index Snapdragon (A.majus) web site SorghumDB - Sorghum genome db SoyBase - Soybean genome db SoyBase metabolic db - Metabolic subset of the soybean genome db TIGR LeGI - TIGR Tomato Gene Index Dendrome - Forest trees genome db
Fungi
Yeast SWISS-PROT list - Links to S.cerevisiae WWW sites and to SWISS-PROT entries SGD - Saccharomyces genome db YPD - Yeast protein db MitBASE-Pilot - Db of S.cerevisiae nuclear genes involved in mitochondrial biogenesis Yeast snoRNA - Yeast small nucleolar RNAs db YTPdb - Yeast Transport Protein db Aspergillus web site C.albicans SWISS-PROT list - Links to C.albicans WWW sites and to SWISS-PROT entries Candida albicans - Candida albicans server at the Univ. of Minnesota NGP - Neurospora genome project S.pombe SWISS-PROT list - Links to S.pombe WWW sites and to SWISS-PROT entries S.pombe NIH - Fission yeast (S.pombe) server at the NIH Phycomyces Web site - Resource site for scientists working on Phycomyces FGSC - Fungal Genetics Stock Center FGR - Fungal Genome Resource
Bacteria
WDCM - World Data Center for Microorganisms List of Bacterial Names with Standing in Nomenclature MDB - TIGR Microbial db HOBACGEN - Homologous Bacterial Genes Comparison of the transport capabilities of bacterial genomes - from Ian Paulsen   E.coli SWISS-PROT list - Links to E.coli WWW sites and to SWISS-PROT entries EcoWeb / EcoGene - Very comprehensive E.coli db ECDC - E.coli db collection EcoCyc - Encyclopedia of E.coli genes and metabolism GenProtEC - E.coli genome and proteome db Colibri - E.coli genome db from Pasteur Insitute ECGC - E.coli Genome Center at Wisconsin University DDBJ E.coli - E.coli home page at DDBJ   B.subtilis SWISS-PROT list - Links to B.subtilis WWW sites and to SWISS-PROT entries SubtiList - Bacillus subtilis genomic db NRSub - Bacillus subtilis non-redundant db [Mirror in Japan] Micado - Microbial advanced db (B.subtilis + E.coli) (previously known as MadBase) BSORF - Japanese server on B.subtilis   A.actinomycetemcomitans - Actinobacillus actinomycetemcomitans strain HK1651 genome project B.stearothermophilus - Bacillus stearothermophilus strain 10 genome project B.pertussis - Bordetella pertussis genome WWW site BbDB - TIGR Borrelia burgdorferi genome db Chlamydia - Chlamydia pneumoniae and trachomatis C.acetobutylicum - GTC Clostridium acetobutylicum strain ATCC 824 data C.jejuni - Campylobacter jejuni strain NCTC 11168 genome WWW site DrDB - TIGR Deinococcus radiodurans genome db F.tularensis - Francisella tularensis genome WWW site H.influenzae SWISS-PROT list - Links to H.influenzae WWW sites and to SWISS-PROT entries HiDB - TIGR H.influenzae genome db HIDC - H.influenzae db collection H.pylori SWISS-PROT list - Links to H.pylori WWW sites and to SWISS-PROT entries HpDB - TIGR Helicobacter pylori strain 26695 genome db H.pylori J99 - Astra Helicobacter pylori strain J99 genome db MycDB - Mycobacterium db M.leprae - GTC Mycobacterium leprae data M.leprae at Sanger - Sanger Centre M.tuberculosis H37Rv genome project M.tuberculosis at GTC - GTC Mycobacterium tuberculosis data TubercuList - Mycobacterium tuberculosis strain H37Rv genome db MtDB - TIGR Mycobacterium tuberculosis strain Oshkosh genome db M.tuberculosis at Sanger - Sanger Centre M.tuberculosis H37Rv genome project M.genitalium SWISS-PROT list - Links to M.genitalium SWISS-PROT entries MgDB - TIGR Mycoplasma genitalium genome db M.pneumoniae - Mycoplasma pneumoniae genome project N.gonorrhoeae - Neisseria gonorrhoeae strain FA 1090 genome project P.aeruginosa - Pseudomonas aeruginosa genome project Rhizobium pNGR234a SWISS-PROT list - Links to Rhizobium plasmid pNGR234a SWISS-PROT entries Rhizobium pNGR234a analysis RsGDB - Rhodobacter sphaeroides genome db R.prowazekii SWISS-PROT list - Links to prowazekii SWISS-PROT entries R.prowazekii - Rickettsia prowazekii strain Madrid E genome project S.typhimurium SWISS-PROT list - Links to S.typhimurium SWISS-PROT entries S.meliloti - Sinorhizobium meliloti genome project S.aureus - Staphylococcus aureus strain NCTC 8325 genome project S.mutans - Streptococcus mutans strain UAB159 genome project S.pyogenes - Streptococcus pyogenes strain M1 genome project CyanoBase - Synechocystis PCC 6803 db TmDB - TIGR Thermotoga maritima genome db TpDB - TIGR Treponema pallidum genome db U.urealyticum - Ureaplasma urealyticum genome WWW site X.fastidosa - Xylella fastidosa genome WWW site Y.pestis - Yersinia pestis genome WWW site
Archebacteria
A.pernix - Aeropyrum pernix K1 genome db AfDB - TIGR Archaeoglobus fulgidus genome db M.jannaschii SWISS-PROT list - Links to M.jannaschii SWISS-PROT entries MjDB - TIGR Methanococcus jannaschii genome db MjFdb - Methanococcus jannaschii functions db M.thermoautotrophicum - Methanobacterium thermoautotrophicum genome db OT3 - Pyrococcus horikoshii OT3 db P.abyssi - Pyrococcus abyssi genome project and db SGP - Sulfolobus acidocaldarius genome project
Viruses
All the virology on the WWW - links to virology WWW servers by David M. Sander ICTVdB - Universal virus taxonomy db AVIS - Animal Virus Information System Plants Viruses Online - Information on plant viruses HIV - HIV and related species db HPV - HPV (papillomaviruses) db Influenza sequence db Picornavirus - Picornavirus home page and access to db   GOLD - Genomes On-line db DOGS - Database of genome sizes
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Gene(s)/protein(s) specific databases/resources
AAA - AAA family of ATPases server Acetylcholinesterases ADB - Albinism db (Mutations in human genes causing albinism) ALDH - Aldehyde dehydrogenase gene superfamily db Aminoacyl-tRNA synthetases in SWISS-PROT - List of aminoacyl-tRNA synthetases in SWISS-PROT AARSDB - Aminoacyl-tRNA synthetases db Allergens in SWISS-PROT - Nomenclature and index of allergens in SWISS-PROT Alpha-glucosidase - Information about human acid alpha-glucosidase (GSD-II) AMSDb - Antimicrobial sequences db AR mutations - Human androgen receptor mutation db Antibody resource page - Links to antibody related Web resources Asthma and Allergy gene db Australian venom and toxin db BIOMDB - Db of mutations causing tetrahydrobiopterin deficiencies TFII - Basal transcription factors Blood group antigens in SWISS-PROT BCGD - Breast cancer genes db from MBCR BRENDA - Db of enzyme functional data BTKbase - Human BTK mutation db (X-linked agammaglobulinemia) EF-hand CaBP - EF-hand calcium-binding proteins db CANSITE - Signal Transduction's Web CAZy - Carbohydrate-Active enZYmes Web site CBS domain - Cystathionine Beta Synthase domain WWW page CD antigens in SWISS-PROT - Nomenclature for surface proteins of human leucocytes (CD) CD antigens in PROW - Database on information about CD antigens CD40Lbase - Human CD40 ligand mutation db Chaperonin - Information on GroEL and GroES chaperonins COL1/3 mutation - Human Type I and III collagen mutation db Conotoxins - Information on conotoxins from a Web site on cone shells CFTR mutation - Human cystic fibrosis mutation db (CFTR) Cytokines Web - Structure and function of cytokines and their receptors COPE - Cytokines On-line Pathfinder Encyclopedia [Mirror in Israel] dbCFC - Cytokine family cDNA db R&D Systems' Cytokine Source Book DExH/D protein family db DPInteract - DNA-Proteins interactions db EMD db - Human Emerin (EMD) mutation db (Emery-Dreifuss muscular dystrophy) ENZYME - Enzymes nomenclature db Worthington enzyme manual Eph - Eph receptor tyrosine kinases and their ligands (ephrins) resource EpoDB - Erythropoiesis gene expression db (Epo GED) ESTHER - Esterases and alpha/beta hydrolase enzymes Expansins web site Modules - Extracellular proteins modules (domains) KMeyeDB - Eye disease genes db FVII mutation - Human Factor VII mutation db HAMSTeRS - Human Factor VIII mutation db (Haemophilia A) HAeMB - Human Factor IX mutation db (Haemophilia B) FADPNR - FAD-dependent pyridine nucleotide oxidoreductases FBN1 mutation - Human fibrillin 1 mutation db (Marfan syndrome) Flavodoxins FlyNets - Db of molecular interactions in Drosophila melanogaster FYVE finger domain G6PD - Human G6PD deficiency resource GABAagent - GABA receptors WWW site Galt mutation - Human galactose-1-phosphate uridylyltransferase mutation db (Galactosemia) Globin - Globin gene server Glucoamylases Glycosyl hydrolases in SWISS-PROT - Nomenclature and index of glycosyl hydrolases in SWISS-PROT 7TM in SWISS-PROT - List of G protein coupled receptors in SWISS-PROT GCRDb - G protein-coupled receptor db GPCRDB - G protein-coupled receptor db (7TM) at EMBL ORDB - Olfactory receptor db GRAP - G protein coupled receptors family A mutants db GRR - Glucocorticoid receptor resource Glycosyltransferases - A guide to cloned glycosyltransferases GnRH - Gonadotropin-releasing hormones (GnRH) family GyrB - GyrB protein Yeast RNA helicases HEXAdb - Human Hexosaminidase A mutation db (Tay-sachs disease) Histone - Histones db HIVdb - HIV protease db HotMolecBase - Molecules (mainly proteins) that are promising targets for medical applications Homeobox - Homeobox domain proteins resource HOX-Pro - Homeobox genes db Hox proteins in SWISS-PROT - Vertebrate homeotic Hox proteins: nomenclature and index of SWISS-PROT entries Labial - Homeobox genes, labial family HSP100 - HSP100/ClpAB family of chaperones IL2RGbase - Human IL2RG (Interleukin-2 receptor gamma) mutation db (X-SCID) InBase - Inteins db from the New England Biolabs Integrins ICN - The Ion Channel Network KEGG - Kyoto Encyclopedia of Genes and Genomes Kinesin - Kinesin motor proteins Klotho - Biochemical compounds declarative db L1CAM mutation - Human L1CAM mutation db LDLR mutation - Human LDLR mutation db (Familial hypercholesterolemia) LGIC - Ligand Gated Ion Channel subunit db LED - Lipase Engineering Database MDB - Metalloprotein Site Database and Browser Metallothioneins in SWISS-PROT - Nomenclature and index of metallothioneins in SWISS-PROT MT - Metallothioneins MHCPEP - MHC binding peptides db Mitochondrial carriers pages from Nelson's lab MitoPick - Mitochondrial NADH-ubiquinone reductase (complex I) web site MRR - Mineralocorticoid receptor resource Mutator - Transposases, Mutator family MutBase - Mutation spectra db (Db on mutants of several bacterial and mammalian genes) MutS - MutS family Neuromuscular diseases web site NCL - Neuronal Ceroid Lipofuscinoses mutation db Neurotrophic factors OTCase - Human ornithine transcarbamylase (OTCase) website O-GlycBase - O-glycosylated proteins db P450 pages from Nelson's lab P450 - Directory of P450-containing systems Cytochrome P450 alleles nomenclature IARC p53 db - IARC db of somatic p53 mutations p53 mutation db - University of Tokyo p53 mutation db Germline p53 mutation db - University of Prague db of germline p53 mutations PAHdb - Human phenylalanine hydroxylase (PAH) mutation db PAX6 mutation - Human PAX6 mutation db PhosphoBase - Phosphorylation sites db PDE - Phosphodiesterases Peroxidases Plant Peroxidases Peptidases in SWISS-PROT - Nomenclature and index of peptidases in SWISS-PROT MEROPS - Peptidase db Prolysis - Proteases and inhibitors server Protein Degradation Resource PLACE - Plant cis-acting regulatory DNA elements db PlantCARE - Plant cis-acting regulatory DNA elements db PKR - Protein Kinase Resource PatBase - P-type ATPase db PPAR - Peroxisome Proliferator-Activated Receptor resource PPDB - Phosphoprotein db Prion - Prion and prion disease web site Proteoglycans Phytochromes - Computer analysis of phytochrome sequences RB1base - Human retinoblastoma-associated protein mutation db RecA - RecA protein REBASE - Restriction enzymes and methylases db Restriction enzymes/methylases in SWISS-PROT - List of restriction enzymes and methylases in SWISS-PROT RetNet - Retinal Information Network Retina International Scientific Newsletter - Information on Retinal genes, proteins and diseases Ribosomal proteins in SWISS-PROT - Families and index of ribosomal proteins in SWISS-PROT Ribosomal proteins - Analysis of R proteins by Nikos Kyrpides RNase P - Ribonuclease P db SPAD - Signaling pathway db CSNDB - Cell Signaling Networks db SRPDB - Signal Recognition Particle db SNF2 - SNF2 family TRR - Thyroid hormone receptors resource Topoisomerases - Type I and II topoisomerases TRANSFAC - Transcription factors db TSC2 - Cardiff-Rotterdam Tuberous Sclerosis (TS) db (Tuberin = TSC2 mutation db) TGDB - Tumor gene db Transport Classification System - from Milton Saier UDP Glucuronosyltransferases V BASE - Directory of human V gene sequences (Immunoglobulin germline variable region) VDRR - Vitamin D receptor resource VMD2 mutation - Human VMD2 mutation db vWF mutation - Human von Willebrand factor (vWF) mutation db WD-repeat - WD-repeat proteins family WIT - 'What is There' metabolic models db WormPep - C.elegans proteins db WRN - Human WRN mutation db (Warner disease) WT1 mutation - Human WT1 mutation db YTPdb - Yeast Transport Protein db
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Phylogenetics databases and resources
TreeBASE - Relational db of phylogenetic information The Tree of life - Collection of WWW pages on phylogeny and biodiversity of organisms RDP - Ribosomal db Project ICB - Identification and Classification of Bacteria
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Patents databases
DPD - DNA Patent db Ag Patents - Agricultural Biotechnology patents from the USDA   USPTO patent db - USA Patent and Trademark Office patent db Esp@cenet - Patent information database from the European Patent Office (worldwide coverage)
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References (bibliographic databases)
PubMed Medline server Grateful Med - NLM access to Medline + other ref. db AGRICOLA - AGRICultural OnLine Access; ref. db from NAL Article@INIST - Scientific and Technical Information Institute articles and monographs db PRF/LITDB - Protein Research Foundation Literature db (Japan) Korean Journals Abstract db UnCoverWeb   Hydrogenase references db   SeqAnalRef - Sequence analysis bibliographic references
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Dictionaries, primers, courses, nomenclature, etc.
BioABACUS - Biotechnology ABbreviation and ACronym Uncovering Service BioTech's life science dictionary DCB - Dictionary of cell biology by Julian Dow   AAnP - IUPAC-IUBMB nomenclature for amino acids and peptides Amino acid properties - Physico and chemical information on amino acids Amino acids 2 - Another information page on amino acids (from Berlin Free Univ.) Delta Mass - Db of Post-Translational Modifications Carbohydrates - IUPAC-IUBMB nomenclature for carbohydrates Genetic codes - List of non-standard genetic codes from NCBI Genetic code Viewer - Genetic code viewer at EBI Genes 2000 - Online version of Benjamin Lewin Genes textbook Glossary of Biochemistry and Molecular Biology - by David M. Glick Primer on molecular genetics - from the US Department of Energy Protease protocols - methods to cleave protein sequences Sequence similarity searches primer - from Keith Robison / Harvard Pedestrian guide to analysing sequence databases - from Rost and Schneider / EMBL Weight matrices for sequence similarity scoring - from David Wheeler / MBCR Biocomputing courses resource list - Syllabi for a variety of courses and tutorials on Bioinformatics (from VSNS BCD) Biocomputing tutorials - EMBnet Biocomputing tutorials BioComputing Hypertext Coursebook - from VSNS BCD BioActivity - Protein sequence and structure analysis: a practical guide Homology modelling course - from the EMBL Tutorial on secondary structure prediction - from Harry Mangalam / UC Irvine Introduction to Glycolysis - from Leeds University Molecular biology protocols - from NWFSC Molecular biology protocols - from MBS (Molecular Biology Shortcuts) Graphics Gallery - Access Excellence (Genentech) Biotechnology graphics gallery Abbreviations of chemical compounds List of nomenclature related references for proteins - from SWISS-PROT GO - Gene Ontology Consortium WWW site HUGO nomenclature committee JCBN - IUPAC-IUB Joint commission on Biochemical Nomenclature (JCBN) BIOSIS glossary of nomenclature terms in zoology   Nobel Foundation Website The Nobel prize Internet Archive   NCBI Taxonomy BIOSIS Codes of Nomenclature for the naming of organisms BIOSIS Taxonomy and Nomenclature List of Bacterial Names with Standing in Nomenclature ISIS - International Species Information System Species 2000 - Project to provide in an electronic form the names and taxonomy of all known species
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Biological software and databases catalog servers
BioCatalog - The BioCatalog at EBI Yellow BAGI - Bio Access Guide to the Internet at Houston University Software library from Genamics.com DBCAT - Databases catalog at INFOBIOGEN MBDL - Molecular Biology Database List
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Gateways to Life Sciences resources
Art's Biotechnology Resource Biofind - Biotechnology industry information, gossip and news BioInfo - Bioinformatics news Bioinformatik.de - Web directory for bioinformatics BioNetbook - Institut Pasteur gateway to biosites Bioplanet - The bioinformatics homepage BSL - BioScience links from Russia Biotaq.com BioTech BioView - Site for Biopharmaceutical jobs, news, information and resources Molecular Biology Gateway from Horizon Press Macromol Online Network Science MBS - Molecular Biology Shortcuts Symbios, Inc. - Biotechnology and pharmaceutical career service   Chemdex.com - Online reagent ordering resource
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Biological journals and publishers
Resources that links to journals home pages
SWISS-PROT journals list - Provides direct links to most biological journals home pages Biochemistry and Molecular Biology Journals - Jim Beasley page of biological journals Medical journals list from Joe Buenker Medical Journal Online - List of journals from the University of Texas Research Medical Library Science journals db from the Korean Basic Science Institute Journal links from the Singapore bioinformatics center Journal index from Genamics.com Journal index from Horizon Scientific Press Mednav.com clinical journals list Mednav.com basic research journals list HUM-MOLGEN - HUM-MOLGEN communication forum home page for journals TOC MJF - Medical Journal Finder Highwire Press links to top Science Journals Medline full text lists - List of journals in Medline with Web sites   ChemConnect list of chemical journals   ISI Journal lists - Institute for Scientific Information list of journals ISSN - International Standard Serial Number organization
Publishers
AACR - American Association for Cancer Reasearch publications Allen Press, Inc. AMA - American Medical Association publications APS - American Physiological Society publications ACS - American Chemistry Society publications AP - Academic Press ASM - American Society of Microbiology publications Annual Reviews Bentham Science Publishers Bioline Publications BioScientifica Ltd Birkhauser Verlag Basel Blackwell Science BMJ - British Medical Journal publishing group Carfax Publishing Ltd Cell Press Churchill Livingstone COB - Company of Biologists Ltd CRC Press, Inc. CSHL - Cold Spring Harbor Laboratory Press CSIRO - CSIRO Publishing CUP - Cambridge University Press CJP - Carden Jennings Publishing Co. Ltd Marcel Dekker, Inc. Elsevier Science [Mirror in the US] FASEB publications G+B - Gordon and Breach Publishing Group HighWire Press Horizon Scientific Press Humana Press, Inc. IOS Press IR - Inter-Research Science Publisher Karger AG KAP - Kluwer Academic Publishers Editrice Kurtis JL - John Libbey Eurotext LW&W - Lippincott Williams and Wilkins Mary Ann Liebert Masson Mosby Munksgaard IAPC NAUKA - NAUKA International Academic Publishing Company (Russia) NRC Research Press OUP - Oxford University Press Parthenon Publishing Group Pharmaceutical Press Plenum Press Portland Press Pulsus Group Inc. Rockfeller University Press Sage Science Press Sheffield Academic Press SGM - Society for General Microbiology publications SIR - SIR Publishing Slack, Inc. Spektrum Akademischer Verlag Springer-Verlag Stockton Press Swets & Zeitlinger T&F - Taylor & Francis Ltd [Mirror in the U.K.] Thieme University of Chicago Press Urban and Fischer Verlag VSP - VSP International Science Publishers VZN - Verlag der Zeitschrift fur Naturforschung W de G - Walter de Gruyter and Co. WBS - W.B. Saunders Co. Wiley - John Wiley and Sons [Mirror in the U.K.] Wiley-VCH
Bioinformatics journals and newsletters
Bioinformatics Gene-Combis [No longer published as a separate journal] ISB - In Silico Biology   BioInformer - EBI's newsletter embnet.news - EMBnet's newsletter NCBI Newsletter PDB Quaterly Newsletter B6 - Bulletin d'information du Service d'Informatique Scientifique (Pasteur Institute / FR) GCG Transcript - GCG software newsletter   BioInform - Global Bioinformatics new service BITS - Bioinformatics Information Technology and Systems
Genomic newsletters
Human Genome Project Information Gene Letter GeneticUpdates FGN - Fungal Genetics Newsletter [Mirror in U.K.] Rice Genome Newsletter WBG - Worm Breeder's Gazette Weeds World - International Electronic Arabidopsis newsletter [Mirror at Stanford (USA)]
Miscellaneous
IJC - Internet Journal of Chemistry Plant Gene Register
Biotechnology trade journals
BioCentury BiWorld Online Drug Discovery and Development GEN - Genetic Engineering News
General science journals
Discover magazine Nature New Scientist La Recherche Science Scientific American   Breakthrough! HMS Beagle The Scientist ScienceDaily Magazine Science News Online CNN Sci-Tech - CNN Science and Technology
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Some biological societies and organizations
APS - American Peptide Society ASCB - American Society for Cell Biology ATCC - American Type Culture Collection Biochemical Society BSA - Botanical Society of America CSBMCB - Canadian Society of Biochemistry and Molecular and Cell Biology DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen EMBO - European Molecular Biology Organization ESEB - European Society for Evolutionary Biology ESHG - European Society of Human Genetics FASEB - Federation of American Societies for Experimental Biology FEBS - Federation of European Biochemistry Societies FGM - Foundation for Genetics Medicine HUGO - HUman Genome Organization IUBMB - International Union of Biochemistry and Molecular Biology IUPAC - International Union of Pure and Applied Chemistry JBS - Japanese Biochemical Society MSA - Mycological Society of America PRF - Protein Research Foundation SDB - Society for Developmental Biology SGM - Society for General Microbiology SICB - Society for Integrative and Comparative Biology   DOI - Digital Object Identifier foundation   Bioperl Project ISCB - International Society for Computational Biology OMG LSR - Object Management Group Life Science Research task force
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Biocomputing servers homepages
Europe
EBI - European Bioinformatics Institute EMBnet - European Molecular Biology Network EMBL - EMBL Biocomputing unit   SIB - Swiss Institute of Bioinformatics EMBnet CH - Switzerland EMBnet node ISREC - ISREC bioinformatics group (Lausanne / Swizerland) CBRG - Computational Biochemistry Research Group (Zurich / Switzerland)   INFOBIOGEN - GIS INFOBIOGEN; France EMBnet node ABIM - Atelier BioInformatique (Marseille / FR) B3E - Bioinformatique/Biostatistique/Biomathematique/Epidemiologie (Paris / FR) CNRS GDR 1029 - Informatique et génomes Genethon - Genethon (Evry / FR) GeneStream - Institut de Génétique Humaine (Montpellier / FR) GENOSCOPE - Centre National de Séquencage (Evry / FR) IGS - Information Génétique et Structurale (Structural and Genetic Information Laboratory) (Marseille / FR) IMPG - Action Informatique Mathématique Physique pour la Génomique Pasteur - Institut Pasteur (Paris / FR) PBIL - Pole Bio-informatique Lyonnais (Lyon / FR) DESS IAB - DESS Informatique Appliquée a la Biologie   SEQNET - SEQNET; U.K. EMBnet node Sanger - Sanger Centre (Hinxton / U.K.) HGMP - MRC HGMP Resource Centre (Hinxton / U.K.) Beowulf Genomics - Wellcome Trust genome sequencing initiative WWW site BMM - Biomolecular Modelling laboratory at ICRF (London / U.K.) Manchester - Manchester University Bioinformatics unit Warwick Protein Bioinformatics Group - Protein Structure Group in the Department of Biological Sciences at the University of Warwick (U.K.) RIO - Roslin Institute Online (U.K.)   GeniusNet - DKFZ Biocomputing Service Group; Germany EMBnet node GSF AG BIODV - Software Development for Molecular Biology at the GSF Institut fuer Sauegetiergenetik GSC - Genome Sequencing Center (Iena / Germany) MDC:Bioinf - Department of Bionformatic of the Max Delbruck Center for Molecular Medicine (Germany) MIPS - Munich Information Centre for Protein Sequences (Germany) VSNS BCD - Virtual School of Natural Sciences Biocomputing Division from the University of Bielefeld (Germany)   BCC - Vienna University Department for Biocomputing; Austria EMBnet node BEN - Belgium EMBnet node BIOBASE - Denmark EMBnet mode CBS - Center for Biological Sequence Analysis (Technical University of Denmark) CSC BioBox - CSC; Finland EMBnet node IMBB - Greece EMBnet node ABC - Agricultural Biotechnology Center (Budapest / Hungary) INCBI - Irish National Center for Bioinformatics; Ireland EMBnet node TigemNet - Telethon Institute of Genetics and Medicine Bioinformatics resources (Italy) CAOS/CAMM - Netherland EMBnet node BIO - Norway EMBnet node IBB - Institute of Biochemistry and Biophysics (Warsaw); Poland EMBnet node Pen - Portugal EMBnet Node Belozersky Institute - Belozersky Institute (Moscow); Russia EMBnet node MGS - Molecular Biological Server (Novosibirsk / Russia) CNB - Centro Nacional de Biotecnologia; Spain EMBnet node BMC - BioMedical Centre at Uppsala; Sweden EMBnet node KISAC - Karolinska Institute (KI) Sequence analysis facility LCB - Linnaeus Centre for Bioinformatics NBN - National Bioinformatics Node; Turkey EMBnet node Bioserver - Biocomputing server at Bogacizi University (Turkey)
USA and Canada
NCBI - National Center for Biotechnology Information   ABCC - Advanced Biomedical Computing Center at the NCI ACGT - Advanced Center for Genome Technology at the University of Oklahoma BCM HGC - Baylor College of Medicine Human Genome Center BDGP - Berkeley Drosophila Genome Project BioTech - BioTech biology/chemistry educational resource and research tool BIC - The Biotechnology Information Center BMERC - Biomolecular Engineering Research Center CBIL - Computational Biology and Informatics Laboratory at the University of Pennsylvania CUBIC - Columbia University Bioinformatics Center GSC - Genome Sequencing Center at Washington University HGP Columbia - Human Genome Project at Columbia University IBC - Washington University Institute for Biomedical Computing LANL - Los Alamos National Laboratory (LANL) center for human genome studies LBNL - Lawrence-Berkeley National Laboratory (LBNL) Human Genome informatics group MBCR - Molecular Biology Computational Resource at Baylor College of Medicine NCGR - National Center for Genome Resources NIH - NIH molecular biology SAGC - The San Antonio Genome Center TIGR - The Institute for Genome Research WICGR - Whitehead Institute Center for Genome Research   CBR - Canadian Bioinformatics Resource BSC - Bioinformatics Supercomputing Centre
Asia
APBioNet - Asia-Pacific Bioinformatics network   University of Pune (India) Bioinformatics Centre BIC-JNU - Bioinformatics Center of Jawaharlal Nehru University   Japanese GenomeNet NIG - National Institute of Genetics of Japan KDRI - Kazusa DNA Research Institute   CBI - Peking Center of Bioinformatics; Chinese EMBnet node PKUBIOS - Peking University Bioinformatics Server MICRO-NET - Microbial Information Network of China HKBIC - Hong Kong Bioinformatics Center   BRIC - Biological Research Information Center (Korea) BIC - BioInformatics center of the National University of Singapore
Australia
APBioNet - Asia-Pacific Bioinformatics network   ANGIS - Australian National Genomic Information Service ANU - Australian National University Bioinformatics group APAF - Australian Proteome Analysis Facility
Others
HUJI - Hebrew University of Jerusalem genomic and bioinformatics server Weizmann Bioinfo/BCU - Weizmann Institute of Science Bioinformatics and Biological Computing   SANBI - South African BioInformatics Institute   BDT - Base de Datos Tropical (Sao Paulo / Brazil)   ICCBnet - International Center for Cooperation in Bioinformatics Network ICGEB - International Center for Genetic Engineering and Biotechnology (Trieste / Italy)
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Biotechnology and pharmaceutical companies
NBIF Biotechnology company registry Pharmaceutical Research and Manufacturers of America membership list Bioportfolio - Gateways to biobusiness   ABTI - Alpha-Beta Technology, Inc. Affymetrix, Inc. AlphaGene, Inc. Amersham Pharmacia Biotech Amgen ARIAD Pharmaceuticals, Inc. AS - Ares-Serono AstraZeneca Pharmaceuticals Atheris Laboratories SA Bayer Bio Balance, Inc. Biogen, Inc. Bio-Rad Laboratories, Inc. BioSystematica BioVisioN GmbH BTC - BioSpecifics Technology Co. Celera Genomics Co. Centocor, Inc. Ciphergen Biosystems, Inc. Clontech Laboratories, Inc. Cognetix, Inc. CuraGen Co. deCODE Genetics, Inc. Destiny Pharma Ltd. Diversa Co. Eli Lilly Emerald BioStructures, Inc. Entelechon GmbH Enzon, Inc. Epidauros Biotechnologie AG EVOTEC BioSystems AG EPI - Exelixis Pharmaceuticals, Inc. Fermentas AB Genaissance Pharmaceuticals, Inc. Genencor International Inc. Genentech, Inc. Genetics Institute GeneProt - Geneva Proteomics GS - Genome Systems, Inc. Genomic Solutions, Inc. Genset Genzyme Co. Geron Co. Glaxo Wellcome Gryphon Sciences GTC - Genome Therapeutics Co. (Collaborative Research Inc.) Helix Biopharma Co. HGS - Human Genome Sciences, Inc. Hoechst Hoechst Marion Roussel HRI - Helix Research Institute, Inc. Hybrigenics SA Hyseq, Inc. Incyte Pharmaceuticals, Inc. Integrated Genomics, Inc. Invitrogen LAROVA Biochemie GmbH LSB - Large Scale Biology Co. LTI - Life Technologies, Inc. MetaXen Memorec - Medical Molecular Research Cologne GmbH MPI - Millennium Pharmaceuticals, Inc. Millipore Co. MOLOGEN GmbH Myriad Genetics, Inc. NEB - New England Biolabs, Inc. NGI - National Genetics Institute Novo Nordisk OGS - Oxford GlycoSciences Parke-Davis Peptech Ltd. Pfizer, Inc. Pharmacia Biotech Pharmingen Pharsight Co. Phoretix Promega Co. Proteome, Inc. PSL - Proteome Systems Ltd ProZyme, Inc. QIAGEN GmbH Repligen Co. Research Genetics, Inc. Roche Bioscience Sanofi-Synthelabo SB - SmithKline Beecham Sequenom Industrial Genomics Shire Pharmaceuticals Group plc Sigma-Aldrich Synt:em TopLab GmbH Vertex Pharmaceuticals WITA - Wittmann Institute of Technology and Analysis of Biomolecules GmbH Worthington Biochemical Co. Xenometrix, Inc. Xerion Pharmaceuticals GmbH Yamanouchi Pharmaceuticals Co. Zycos, Inc. 5 Prime, Inc.
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Bioinformatics companies
ACD - Advanced Chemistry Development, Inc. ApoCom, Inc. Base4 Bioinformatics BioDiscovery, Inc. Bioinformatics Solutions Ltd. Biomedical Computing, Inc. BIOSIS BIOSOFT BioTools, Inc. Caesar Software LLC CallistoGen AG Cognia Corporation, Inc. Compugen [USA | Israel] DGT- Digital Gene Technologies, Inc. DNA* - DNAStar DoubleTwist, Inc. (formerly Pangea Systems) eBioinformatics EraGen Biosciences FQS - FQS Poland Sp. z.o.o. Genamics GeneBio - Geneva Bioinformatics SA GCG - Genetics Computer Group Gene Codes Co GeneData AG Gene-IT SA GENETYX - Software Development Co, GENETYX software Genomatix Software GmbH Genomica Geospiza, Inc. Hitachi - Hitachi USA Genetic Systems InforMax, Inc. Inpharmatica Lambda-Plus SA LION Bioscience AG MAG - Molecular Applications Group MASA - Mathématiques Appliquées SA Matrix Science Ltd MDL - MDL Information Systems, Inc. MediGenomix GmbH Metaphorics LLC Microrite MSI - Molecular Simulations, Inc. NBI - National Biosciences Neomorphic Software, Inc. NetGenics Net-ID, Inc. OML - Oxford Molecular Group [Mirror in the USA] Paracel, Inc. PE Informatics - Perkin-Elmer Informatics PREMIER Biosoft International ProteoMetrics Scitech SGI - Silicon Graphics, Chemistry and Biological Sciences Spotfire, Inc. Synomics Ltd SBI - Structural Bioinformatics, Inc. SGX - Structural GenomiX, Inc. TimeLogic Corp. Bioinformatics Division Tripos Inc. WebGenetics
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BioMolecular Java applications and demos
JaMBW - Java-based Molecular Biology Workbench   CINEMA - Interactive multiple alignment editor Java Ribosome - DNA to protein translation HelixWheel - Tools to represent a protein fragment as an helical wheel Shuffle - Randomly shuffle a sequence PDB3D - 3D molecule display DNA Primer Melt Calculator SStructView - RNA secondary structure viewer BioViews - Drosophila genome exploration tools Flies in your Java - Map display of Drosophila genes, aberrations, clones, etc.
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Other links

Miscellaneous medical references sites
HON - The Health On the Net foundation server Hardin MD - Hardin meta directory of Internet health sources Mednav.com - Guide to the Internet medicine MedWeb - Medical links site   FDA CDER - FDA Center for Drugs Evaluation and Research NLM - National Library of Medicine   MedicineNet - Medical Reference Site MedSite Navigator - Medical and Biotech site MMRL - Multimedia Medical Reference Library OMD - On-line medical dictionary (on CancerWEB) OMNI - Organising Medical Networked Information Medline Plus - NLM list of resources for health questions ORPHANET - Resource dealing with rare diseases and orphan drugs ORD - Office of Rare Diseases ReutersHealth - Reuters Medical News PharmInfoNet - Pharmaceutical Information Network NMDWD - New Medicines in Development WebDatabase Prous Science - Medical and drug information provider TOXNET - Toxicology, hazardous chemicals and related areas db Visible Human at EPFL - EPFL server for the images of the "Visible Human" NLM project   DrugDB - Db of information about drugs Electronic Orange Book - FDA list of approved drug products 1
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Miscellaneous scientific references sites
Chemcyclopedia Online - Db of commercialy available chemicals Periodic table of the elements   IDB - Internet Directory for Botany BIOSIS index to Resource Guide to Zoology web files   SciCentral - Gateway to the best science directories <!- Science Guide - Gateways to science sites and science news-> UniGuide Academic Guide to the Internet INFO CONNECT - Academic informations resources gateway   The Nine Planets Planetary Society NASA Earth and moon viewer - View the earth or the moon from any geographical or astronomical position J-Track 3D - View satellite tracking information Microsoft TerraServer - World imagery db SETI league - Organization to Search for Extra-Terrestrial Intelligence
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Miscellaneous general references sites
Library of Congress British Library Encyclopaedia Britannica and other resources Encarta - Microsoft encyclopedia Internet Encyclopedia A Web of on-line dictionaries - Links to many dictionaries in a variety of languages Roget's Thesaurus Webster dictionary and thesaurus Dictionary of acronyms Jargon File - Electronic version of the 'New Hacker's Dictionary' IMDb - Internet Movie Database The Greatest Films City Net - Repository of touristic information 3D Atlas - Geography server CIA - Central Intelligence Agency server Internet Disaster Information Center Europa - European Union official server WED - World email directory Units converter Universal currency converter Calculating Machines Beliefnet - Portal for religious sites
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News
ABC CNN Courrier International News from Reuters Newsweek Time Magazine USA Today L'Hebdo - 'Webdo' Edipresse Le Temps International Herald Tribune Le Monde Diplomatique The New York Times Jerusalem Post Slate News.Com - Computer news Weather forecasts Excite NewsTracker - Service to search on-line news sources News Index - News search engine
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Computing-related links
Shareware directory Perl - Perl language home page Gnu - Gnu project home page Linux - Linux operating system home page Java - Java programming language 'home' site Winfiles.com - Windows 95, 98, NT Web Site Win95 annoyances - Windows 95 annoying features and workarounds Gamelan - Earthweb's Java directory Easter Egg Archive List of files extensions and formats The Icon Bank - Db of icons Internet Gallery of GIF Animation Animation City - Animated GIF site Opera Software - An alternative browser (fast and efficient) Webshots - Wallpaper and screen saver software Search Engine Watch - Information on Web search engines
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Recreational links
BOFH - The Bastard Operator from Hell archives La revolution des fourmis - Site sur la trilogie des fourmis de Bernard Werber   Leonard's cam world - World list of on-line video cameras EarthCam - A comprehensive reference directory of on-line video cameras Images.com - WebCam theater (Live Cams!)   AIR - The Annals of Improbable Research Darwin awards - Given to individuals that remove themselves from the gene pool in the most spectacular fashion Science Made Stupid Swiss-Jokes - ExPASy collection of scientific jokes Science Jokes - Jokes collected by Joachim Verhagen AGD antics and mayhem page - More 'scientific' experiments !! Backyard ballistics MIT Hacks archive - A compendium of (elaborate) practical jokes organized at MIT Strawberry pop-tart blow-torches George Goble home page - Or how to start a barbecue in 3 seconds (with liquid oxygen !) MoonShop - The Moon Shop; how to get a property on the Moon!   The comics hotlist Stus' Comic Strip Connection Over the Edge Today's Cartoon - Randy Glasbergen cartoons   Amused.com Cryptozoology WWW site SIPP - Structure of Interactive Psycho Philosophy (explain the universe through DNA!) !sdrawkcaB - Backwards !, a site to display WWW pages backwards
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Disclaimer

This list is not supposed to be complete, it reflects my (Amos Bairoch) interests and will list servers that I find useful and up to date.